Entry Detail



General Information

Database ID:exR0076095
RNA Name:LIN28A
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):26410817End Site(bp):26429728
External Links:ENSG00000131914



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AHCYL2
chr7
129225023
129430211
+
AGAP1
chr2
235494043
236131800
+
ACKR3
chr2
236567787
236582354
+
AC131160.1
chr3
183815568
183884889
-
ACTR3B
chr7
152759749
152855378
+
AC006064.6
chr12
6556886
6607367
-
AC027644.4
chr7
66628958
66811189
+
AC008575.1
chr5
112827213
112867582
+
AASS
chr7
122073549
122144255
-
AC073508.2
chr17
40627356
40665141
-
ACOT2
chr14
73567620
73575658
+
ADAR
chr1
154582057
154628013
-
AC004832.3
chr22
30409255
30428990
+
ABCE1
chr4
145098288
145129524
+
AKAP8L
chr19
15380050
15419141
-
AKR7A2
chr1
19303965
19312146
-
ADCY2
chr5
7396138
7830081
+
AL139300.1
chr14
103562962
103685924
+
ALDH4A1
chr1
18871430
18902724
-
AK7
chr14
96392128
96489427
+
ABI2
chr2
203328239
203447728
+
AC007192.1
chr19
18153158
18178117
+
AL138752.2
chr9
37588413
38068687
-
AC118549.1
chr1
77562416
77683419
-
ACAA1
chr3
38103129
38137242
-
ADGRL1
chr19
14147743
14206187
-
ADD3
chr10
109996368
110135565
+
AK2
chr1
33007940
33080996
-
ABHD13
chr13
108218392
108234243
+
ACTB
chr7
5527148
5563784
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-3654
chr7
133034860
133034878
-
hsa-miR-664b-5p
chrX
154768596
154768619
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC009446.1
chr8
71675300
71702786
+
AC012615.1
chr19
1874871
1876169
-
AC016747.4
chr2
61115787
61164825
+
AC016876.2
chr17
7581964
7584086
-
AC106864.1
chr4
112693047
112706810
-
AC114284.1
chr5
120781218
120790778
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
AL137782.1
chr13
75549773
75807120
+
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA