Entry Detail



General Information

Database ID:exR0077435
RNA Name:NAP1L1
RNA Type:mRNA
Chromosome:chr12
Starnd:-
Coordinate:
Start Site(bp):76036585End Site(bp):76084958
External Links:ENSG00000187109



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGO4
chr1
35808016
35857890
+
AC104109.3
chr5
134167170
134226071
-
AC007040.2
chr2
70939318
70995336
-
AFDN
chr6
167826922
167972023
+
AKR1E2
chr10
4786629
4848062
+
ABHD8
chr19
17292131
17310236
-
AC118549.1
chr1
77562416
77683419
-
AL139353.1
chr14
31334312
31457441
-
ALDH2
chr12
111766887
111817532
+
ACTR3
chr2
113890063
113962596
+
AIF1L
chr9
131096476
131123152
+
AGPAT5
chr8
6708642
6761503
+
AC107871.1
chr15
68184032
68229718
-
ACOT7
chr1
6264269
6394391
-
ACTB
chr7
5527148
5563784
-
ADCY2
chr5
7396138
7830081
+
AFTPH
chr2
64524305
64593005
+
AC007192.1
chr19
18153158
18178117
+
AC008764.1
chr19
16479067
16628204
-
AC120057.2
chr17
7240427
7244635
-
AC139530.2
chr17
81703371
81720539
+
ACKR3
chr2
236567787
236582354
+
AL133352.1
chr10
100505628
100529881
-
AHCYL1
chr1
109984765
110023742
+
AC138811.2
chr16
18788063
18801519
-
AGAP5
chr10
73674285
73698159
-
ALAD
chr9
113386312
113401290
-
AC027796.3
chr17
3585149
3636249
-
ADNP2
chr18
80109262
80147523
+
AL669918.1
chr6
32813767
32838822
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007161.3
chr7
7640752
8004053
+
AC007686.3
chr14
77028086
77031572
+
AC020928.2
chr19
36773712
36775908
-
AC022400.3
chr10
73674295
73730466
-
AC022762.2
chr11
6201901
6203253
-
AC084824.5
chr12
32736930
32737660
-
AC116407.1
chr17
32141226
32143135
-
AC125257.1
chr17
41848518
41851447
-
AC144548.1
chr12
110387463
110445548
-
AD000090.1
chr19
35557956
35581954
+
AF131215.5
chr8
11107788
11109726
-
AL022316.1
chr22
42438023
42446195
+
AL121992.1
chr1
15586136
15603626
-
AL133346.1
chr6
131950946
132077393
+
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA