Entry Detail



General Information

Database ID:exR0080572
RNA Name:RPL11
RNA Type:mRNA
Chromosome:chr1
Starnd:+
Coordinate:
Start Site(bp):23691742End Site(bp):23696835
External Links:ENSG00000142676



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AFDN
chr6
167826922
167972023
+
AC139530.2
chr17
81703371
81720539
+
AIF1L
chr9
131096476
131123152
+
AKNA
chr9
114334156
114394405
-
AIMP2
chr7
6009255
6023834
+
ADORA2A
chr22
24417879
24442357
+
ACTG1
chr17
81509971
81523847
-
AIDA
chr1
222668013
222713210
-
ABCA3
chr16
2275881
2340746
-
ABL2
chr1
179099330
179229684
-
ACAA1
chr3
38103129
38137242
-
AKIRIN1
chr1
38991276
39006059
+
ACTR3
chr2
113890063
113962596
+
ACP1
chr2
264140
278283
+
AAAS
chr12
53307456
53324864
-
ADD2
chr2
70607618
70768225
-
AKR1B1
chr7
134442356
134459284
-
ACIN1
chr14
23058564
23095614
-
ABHD12
chr20
25294742
25390835
-
AC091167.2
chr15
90249556
90272208
+
AC245033.1
chr15
82536788
82573194
-
AC007192.1
chr19
18153158
18178117
+
ALDOA
chr16
30064164
30070457
+
ALDH4A1
chr1
18871430
18902724
-
AC010422.3
chr19
12643831
12648397
-
AC008770.2
chr19
11925075
11979290
+
ABRACL
chr6
139028745
139043302
+
ADM2
chr22
50481543
50486440
+
ADGRG1
chr16
57610652
57665580
+
ACTA1
chr1
229431245
229434098
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005083.1
chr7
20217577
20221700
+
AC016876.2
chr17
7581964
7584086
-
AC040162.3
chr16
67882461
67886367
+
AC091564.7
chr11
6610883
6616594
-
AC092910.3
chr3
120094895
120136783
+
AC096992.2
chr3
136837338
136839021
-
AC104793.1
chr4
161378953
161388417
+
AC105339.2
chr15
82752884
82757208
+
AC108010.1
chr7
128574751
128626473
+
AC245014.3
chr1
145281116
145281462
+
AC245033.4
chr15
82533175
82540008
-
AL022311.1
chr22
37876148
37895563
+
AL023653.1
chrX
129794994
129796963
+
AL118516.1
chr22
46761894
46762563
-
AL133243.2
chr2
32521927
32523547
+
AL137782.1
chr13
75549773
75807120
+
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA