Entry Detail



General Information

Database ID:exR0080580
RNA Name:RPL18
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):48615328End Site(bp):48619184
External Links:ENSG00000063177



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AKIRIN2
chr6
87674860
87702233
-
ADAM9
chr8
38996869
39105261
+
AC015813.2
chr17
57989038
58007246
-
AC087289.3
chr17
75898645
75930129
-
AC004922.1
chr7
99325879
99394653
+
ACO2
chr22
41469117
41528989
+
AIF1L
chr9
131096476
131123152
+
AC092143.1
chr16
89919165
89936092
+
ABHD12
chr20
25294742
25390835
-
ACTG1
chr17
81509971
81523847
-
AGPAT1
chr6
32168212
32178096
-
AEN
chr15
88621337
88632281
+
AACS
chr12
125065434
125143333
+
AL021546.1
chr12
120438198
120460006
+
AL133352.1
chr10
100505628
100529881
-
ADNP
chr20
50888916
50931437
-
ACVR1B
chr12
51951699
51997078
+
AC010132.3
chr7
42909273
42932174
-
ACLY
chr17
41866917
41930542
-
AC010422.3
chr19
12643831
12648397
-
ACOT2
chr14
73567620
73575658
+
AC093525.2
chr16
2496032
2520218
+
AHCTF1
chr1
246839098
246931967
-
AC079594.2
chr3
160227454
160449829
-
AC068580.4
chr11
1734821
1763954
-
ALDH9A1
chr1
165662216
165698863
-
ACTN4
chr19
38647649
38731589
+
AGO1
chr1
35869808
35930532
+
ALDH18A1
chr10
95605941
95656711
-
ADM
chr11
10305073
10307397
+
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005519.1
chr14
74289127
74294425
-
AC006064.5
chr12
6510275
6510522
+
AC007569.1
chr12
108628668
108642349
+
AC010733.2
chr2
60925909
60931610
+
AC011467.3
chr19
22603269
22608501
+
AC016876.2
chr17
7581964
7584086
-
AC020928.2
chr19
36773712
36775908
-
AC022154.1
chr19
48619272
48624132
-
AC023509.1
chr12
53441741
53467528
+
AC067930.1
chr8
143579636
143580670
+
AC090204.1
chr8
32927913
33045445
+
AC095055.1
chr4
151139991
151141103
+
AC132217.1
chr11
2129121
2129964
-
AD000090.1
chr19
35557956
35581954
+
AL031282.2
chr1
1702736
1737688
-
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA