Entry Detail



General Information

Database ID:exR0080653
RNA Name:RPS23
RNA Type:mRNA
Chromosome:chr5
Starnd:-
Coordinate:
Start Site(bp):82273320End Site(bp):82278396
External Links:ENSG00000186468



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AKIRIN2
chr6
87674860
87702233
-
ABCA1
chr9
104781006
104928155
-
AC105052.1
chr7
102582523
102642869
-
AC137834.1
chr12
57249609
57296484
-
ALDOA
chr16
30064164
30070457
+
ACTN4
chr19
38647649
38731589
+
ACTR2
chr2
65227753
65271253
+
ADNP
chr20
50888916
50931437
-
ABL1
chr9
130713016
130887675
+
AL365205.1
chr6
41780349
41790141
+
AIP
chr11
67483026
67491103
+
AL133352.1
chr10
100505628
100529881
-
ACOT7
chr1
6264269
6394391
-
ACAP2
chr3
195274745
195443044
-
ADAR
chr1
154582057
154628013
-
AC118549.1
chr1
77562416
77683419
-
AC005943.1
chr19
1578339
1605445
-
ADA
chr20
44619522
44652233
-
ALDH7A1
chr5
126531200
126595362
-
AFG3L2
chr18
12328944
12377227
-
AL136295.1
chr14
24189157
24213473
-
ADORA1
chr1
203090654
203167405
+
ACTG1
chr17
81509971
81523847
-
ABCE1
chr4
145098288
145129524
+
AAGAB
chr15
67200667
67255195
-
ADARB1
chr21
45073853
45226560
+
ACSS3
chr12
80936414
81261210
+
ABHD8
chr19
17292131
17310236
-
ABHD10
chr3
111979010
111993368
+
ACTB
chr7
5527148
5563784
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-19a-3p
chr13
91350939
91350961
+
hsa-miR-19b-3p
chr13
91351245
91351267
+
hsa-miR-135b-5p
chr1
205448361
205448383
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC007566.1
chr7
92457564
92495601
+
AC010226.1
chr5
115602057
115623897
+
AC010442.1
chr5
466124
473098
-
AC012531.2
chr12
54017110
54035361
+
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AC026461.1
chr16
56682470
56687807
+
AC064807.1
chr8
51899268
51949874
+
AC079781.5
chr7
97851688
97972985
-
AC099329.1
chr3
42785087
42852428
-
AC126365.1
chr17
20788071
20789584
+
AC132217.1
chr11
2129121
2129964
-
AD000090.1
chr19
35557956
35581954
+
AL096870.2
chr14
24209646
24215987
-
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA