Entry Detail



General Information

Database ID:exR0080664
RNA Name:RPS4X
RNA Type:mRNA
Chromosome:chrX
Starnd:-
Coordinate:
Start Site(bp):72255679End Site(bp):72277248
External Links:ENSG00000198034



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGPAT3
chr21
43865223
43987592
+
ALDOA
chr16
30064164
30070457
+
ACSL3
chr2
222860942
222944639
+
ADAR
chr1
154582057
154628013
-
ACAA1
chr3
38103129
38137242
-
AL022238.4
chr22
40346529
40410054
+
AL136454.1
chr1
192716132
192716653
+
ADSL
chr22
40346500
40390463
+
AKAP13
chr15
85380571
85749358
+
ADTRP
chr6
11712054
11807046
-
ADA2
chr22
17178790
17258235
-
ABCF2
chr7
151207837
151227166
-
AC026464.4
chr16
69299682
69322700
+
AC011530.1
chr19
45779437
45785973
-
AL590764.2
chrX
71103987
71111575
-
AKR1A1
chr1
45550543
45570049
+
AASS
chr7
122073549
122144255
-
AC245033.1
chr15
82536788
82573194
-
ADRM1
chr20
62302093
62308862
+
AC010422.3
chr19
12643831
12648397
-
ACAD9
chr3
128879596
128916067
+
ACKR3
chr2
236567787
236582354
+
AC010132.3
chr7
42909273
42932174
-
AC139530.2
chr17
81703371
81720539
+
ACAT1
chr11
108116695
108147603
+
AC120057.2
chr17
7240427
7244635
-
ACTB
chr7
5527148
5563784
-
ACIN1
chr14
23058564
23095614
-
AC104452.1
chr3
49416777
49429314
-
ACTG1
chr17
81509971
81523847
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-155-5p
chr21
25573983
25574006
+
hsa-miR-3651
chr9
92292461
92292484
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006511.5
chr12
8014093
8019007
-
AC016876.2
chr17
7581964
7584086
-
AC020663.1
chr16
4730115
4752565
-
AC023509.1
chr12
53441741
53467528
+
AC087190.3
chr16
9104848
9113181
+
AC091564.7
chr11
6610883
6616594
-
AC107959.2
chr8
23068229
23083619
+
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
AL118506.1
chr20
63861212
63864293
-
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA