Entry Detail



General Information

Database ID:exR0080667
RNA Name:RPS6
RNA Type:mRNA
Chromosome:chr9
Starnd:-
Coordinate:
Start Site(bp):19375715End Site(bp):19380236
External Links:ENSG00000137154



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ALDH5A1
chr6
24494867
24537207
+
AL365205.1
chr6
41780349
41790141
+
AC093668.1
chr7
102541501
102592444
-
AKR1E2
chr10
4786629
4848062
+
ADCY5
chr3
123282296
123449758
-
AC093155.3
chr1
86993009
87169204
+
ACTR2
chr2
65227753
65271253
+
ABCF1
chr6
30571393
30597179
+
AC138696.1
chr8
143247110
143276403
+
ALDOA
chr16
30064164
30070457
+
AATF
chr17
36948954
37056871
+
AC105052.1
chr7
102582523
102642869
-
ABCF3
chr3
184186023
184194012
+
AL136454.1
chr1
192716132
192716653
+
ADIPOR1
chr1
202940826
202958572
-
ALDH6A1
chr14
74056847
74084492
-
AARD
chr8
116938207
116944487
+
ACOT13
chr6
24667035
24705065
+
ACKR3
chr2
236567787
236582354
+
AHSA1
chr14
77457870
77469472
+
AL139300.1
chr14
103562962
103685924
+
ABHD14B
chr3
51968510
51983409
-
AGAP3
chr7
151085831
151144436
+
AL136295.3
chr14
24120956
24131829
+
AC040162.1
chr16
67929614
67936017
-
AL121594.1
chr14
35122549
35317474
+
ACO2
chr22
41469117
41528989
+
AC009133.6
chr16
29812261
29820092
+
ALDH9A1
chr1
165662216
165698863
-
AARSD1
chr17
42950526
42964498
-
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-26a-2-3p
chr12
57824620
57824641
-
hsa-miR-4426
chr1
192716333
192716349
+
hsa-miR-7705
chr8
100703002
100703024
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005899.4
chr17
32328441
32329395
+
AC012236.1
chr15
31221999
31230838
-
AC016044.1
chr15
52800168
52805972
-
AC016876.2
chr17
7581964
7584086
-
AC023509.1
chr12
53441741
53467528
+
AC115284.1
chr3
51961212
51974031
-
AC135048.1
chr16
30948386
30956511
+
AC245014.3
chr1
145281116
145281462
+
AC245033.4
chr15
82533175
82540008
-
AL022311.1
chr22
37876148
37895563
+
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA