Entry Detail



General Information

Database ID:exR0084562
RNA Name:YWHAE
RNA Type:mRNA
Chromosome:chr17
Starnd:-
Coordinate:
Start Site(bp):1344275End Site(bp):1400222
External Links:ENSG00000108953



Disease Information

Disease Name:Fragile X Syndrome
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D005600
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fragile X Syndromes//Syndrome, Fragile X//Syndromes, Fragile X//Marker X Syndrome//Marker X Syndromes//Syndrome, Marker X//Syndromes, Marker X//Mental Retardation, X-Linked, Associated With Marxq28//X-Linked Mental Retardation and Macroorchidism//X Linked Mental Retardation and Macroorchidism//Fragile X Mental Retardation Syndrome//Martin-Bell Syndrome//Martin Bell Syndrome//Syndrome, Martin-Bell//Fra(X) Syndrome//FRAXE Syndrome//FRAXE Syndromes//Syndrome, FRAXE//Syndromes, FRAXE//Mental Retardation, X-Linked, Associated With Fragile Site Fraxe//Fragile X-F Mental Retardation Syndrome//Mar (X) Syndrome//FRAXA Syndrome//FRAXA Syndromes//Syndrome, FRAXA//Syndromes, FRAXA



Expression Detail

GEO ID:GSE83556
Description:Global transcriptome dysregulation in second trimester fetuses with FMR1 expansions
Experimental Design:Disease vs Control
Case Disease Type:Fragile X Syndrome
Case Disease SubType:NA
Case Sample:Fragile X Syndrome
Control Sample:Normal
Number of Case:22
Number of Control:18
Number of Samples:40





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AKR1B1
chr7
134442356
134459284
-
ADO
chr10
62804720
62808479
+
ADAR
chr1
154582057
154628013
-
AC069368.1
chr15
64841883
64930920
+
ACAT2
chr6
159762045
159779112
+
AJUBA
chr14
22971177
22982551
-
AEN
chr15
88621337
88632281
+
ABCC1
chr16
15949577
16143074
+
ACTG1
chr17
81509971
81523847
-
AC104452.1
chr3
49416777
49429314
-
AC015813.2
chr17
57989038
58007246
-
ADH5
chr4
99070978
99088801
-
ACADSB
chr10
123008979
123058290
+
AFDN
chr6
167826922
167972023
+
AJAP1
chr1
4654609
4792534
+
ADM2
chr22
50481543
50486440
+
ABRACL
chr6
139028745
139043302
+
ACTB
chr7
5527148
5563784
-
AKAP13
chr15
85380571
85749358
+
AL590132.1
chr1
210858125
211134146
-
ACLY
chr17
41866917
41930542
-
AHSA1
chr14
77457870
77469472
+
ADCY2
chr5
7396138
7830081
+
ALDOA
chr16
30064164
30070457
+
ALDH9A1
chr1
165662216
165698863
-
AKAP9
chr7
91940867
92110673
+
AGPAT1
chr6
32168212
32178096
-
ACTR1A
chr10
102461881
102502712
-
AC092073.1
chr19
34396315
34409364
+
AC010463.1
chr19
17267418
17282966
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-let-7b-5p
chr22
46113691
46113712
+
hsa-miR-423-5p
chr17
30117095
30117117
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC008969.1
chr19
58002061
58011232
+
AC010615.2
chr19
21444241
21463908
-
AC020663.1
chr16
4730115
4752565
-
AC026362.1
chr12
122975320
122982907
+
AC040162.3
chr16
67882461
67886367
+
AC106864.1
chr4
112693047
112706810
-
AC125807.2
chr12
3041437
3044950
+
AC132217.1
chr11
2129121
2129964
-
AC139149.1
chr17
81514047
81527776
+
AC145207.5
chr17
81878425
81881106
-
AD000090.1
chr19
35557956
35581954
+
AL022311.1
chr22
37876148
37895563
+
AL117378.1
chr6
131901963
131920565
+
Display:



Experiment Detail

GEO ID:GSE83556
Sample Source:Amniotic Fluid
Source Fraction:Supernatant
Platform:GPL570
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:17063
Sample treatment protocol:RNA was extracted from 5-15 mL amniotic fluid supernatant (centrifugation at 350g, 4C, 10, min).
RNA Extract protocol:All samples were processed using the Qiagen Circulating Nucleic Acid kit with an on-column DNase digestion step to remove genomic DNA. The RNA was then purified and concentrated with the RNeasy MinElute Clean up kit and eluted in RNasefree water.
RNA library preparation protocol:RNA was converted to cDNA and amplified using the Ovation Pico WTA kit V2 and then purified with the QIAquick PCR Purification kit. Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA)Samples were labeled using the Encore Biotin Module (NuGEN, San Carlos, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA