exRNAdisease

Entry Detail

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General Information

Database ID: exR0095230 RNA Name: hsa-miR-708-5p RNA Type: miRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 79402077 End Site(bp): 79402099 External Links: hsa-miR-708-5p

Disease Information

Disease Name: Benign Ovarian Disease Disease Category: Urogenital Diseases and Pregnancy Complications MeSH ID: D010049 Type: Diseases Category/Female Urogenital Diseases and Pregnancy Complications Alias: Ovarian Diseases//Disease, Ovarian//Diseases, Ovarian//Ovarian Disease

Expression Detail

GEO ID: GSE106817 Description: Integrated extracellular microRNA profiling for ovarian cancer screening Experimental Design: Cancer vs Control Case Disease Type: Benign Ovarian Disease Case Disease SubType: NA Case Sample: Benign Ovarian Disease Control Sample: Non-Cancer Number of Case: 29 Number of Control: 2759 Number of Samples: 2788

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ANKRD52 chr12 56237807 56258384 - TUB chr11 8019244 8106112 + ERG28 chr14 75649791 75660876 - KIAA1522 chr1 32741830 32774970 + RGMA chr15 93035273 93089204 - RARG chr12 53210567 53232980 - GPCPD1 chr20 5544439 5611006 - ZBTB7B chr1 155002630 155018522 + GLYR1 chr16 4803203 4847288 - SMARCD1 chr12 50085200 50100707 + UBE2Z chr17 48908407 48929056 + SEH1L chr18 12947133 12987536 + LONRF2 chr2 100271875 100322501 - ENSA chr1 150600851 150629612 - PTMS chr12 6765516 6770952 + ATXN2L chr16 28823035 28837237 + FAM102A chr9 127940582 127980989 - TOB2 chr22 41433494 41446801 - SLC31A1 chr9 113221544 113264492 + PTPN23 chr3 47381011 47413435 + TEX261 chr2 70985942 70994873 - E2F4 chr16 67192155 67198918 + N4BP1 chr16 48538726 48620148 - FOXK1 chr7 4682295 4771442 + DYRK1A chr21 37365573 37526358 + E2F6 chr2 11444375 11466177 - CPSF2 chr14 92121969 92172145 + NAPA chr19 47487637 47515091 - MAPK1 chr22 21754500 21867680 - SMYD1 chr2 88067825 88113384 + miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0000417 chr12 69644908 69656342 + hsa_circ_0001146 chr20 34241449 34246936 - hsa_circ_0001164 chr20 45891031 45923523 - lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC009065.4 chr16 2119207 2120248 + AC016876.2 chr17 7581964 7584086 - AC026362.1 chr12 122975320 122982907 + AC118758.3 chr7 56809214 56848800 - MALAT1 chr11 65497688 65506516 + NEAT1 chr11 65422774 65445540 + OIP5-AS1 chr15 41283990 41309737 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE106817 Sample Source: Blood Source Fraction: Serum Platform: GPL21263 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 2535 Sample treatment protocol: NA RNA Extract protocol: Total RNA was extracted each from 300uL serum samples using 3D-Gene® RNA extraction reagent from liquid sample kit (Toray Industries, Inc.). RNA library preparation protocol: miRNA was labeled using 3D-Gene® miRNA Labeling kit in accordance with the manufacturer's instructions.

Reference

PMID: 30333487 Title: Integrated extracellular microRNA profiling for ovarian cancer screening Author: Yokoi A, Matsuzaki J, Yamamoto Y, Yoneoka Y, Takahashi K, Shimizu H, Uehara T, Ishikawa M, Ikeda SI, Sonoda T, Kawauchi J, Takizawa S, Aoki Y, Niida S, Sakamoto H, Kato K, Kato T, Ochiya T Journal: Nat Commun. 2018 Oct 17;9(1):4319. Description: to develop an optimal detection method, we use microarrays to obtain comprehensive miRNA profiles from 4046 serum samples, including 428 patients with ovarian tumors.