exRNAdisease

General Information

Database ID:

exR0207490

RNA Name:

hsa-miR-330-3p

RNA Type:

miRNA

Chromosome:

chr19

Starnd:

Coordinate:

Start Site(bp):

45639009

End Site(bp):

45639031

External Links:

Disease Information

Disease Name:	Subarachnoid Hemorrhage
Disease Category:	Nervous System Diseases
MeSH ID:	D013345
Type:	Diseases Category/Nervous System Diseases
Alias:	SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial

Expression Detail

GEO ID:	GSE121868
Description:	Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:	Disease Sample Source
Case Disease Type:	Subarachnoid Hemorrhage
Case Disease SubType:	NA
Case Sample:	Subarachnoid Hemorrhage
Control Sample:	Blood Plasma
Number of Case:	257
Number of Control:	266
Number of Samples:	523

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
ANP32B	chr9	97983341	98015943	+
ATRX	chrX	77504878	77786233	-
BCL2L11	chr2	111119378	111168445	+
CBX2	chr17	79778148	79787983	+
CCSER2	chr10	84328586	84518521	+
CRCP	chr7	66114604	66154568	+
DAG1	chr3	49468703	49535618	+
ERLIN1	chr10	100150094	100186033	-
GNAI2	chr3	50226292	50259362	+
HNRNPAB	chr5	178204533	178211163	+
MRFAP1	chr4	6640091	6642745	+
MTMR12	chr5	32226994	32312987	-
NPAT	chr11	108157215	108222638	-
PFN1	chr17	4945652	4949061	-
PKN2	chr1	88684222	88836255	+
RAB10	chr2	26034084	26137454	+
SNX27	chr1	151612006	151699091	+
TNKS	chr8	9555912	9782346	+
TOMM34	chr20	44942130	44960397	-
TRIM25	chr17	56836387	56914080	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000591	chr15	41961025	41962156	+
hsa_circ_0000540	chr14	55799534	55821940	+
hsa_circ_0001731	chr7	100731990	100738448	+
hsa_circ_0001168	chr20	47691321	47707559	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC020978.7	chr16	68224713	68227734	+
AC079781.5	chr7	97851688	97972985	-
AC124045.1	chr3	44667412	44669364	+
AC125257.1	chr17	41848518	41851447	-
AL132655.1	chr20	58833809	58836529	-
AL137129.1	chr14	61734138	61776260	+
AL157392.3	chr10	13631143	13668445	+
FGD5-AS1	chr3	14920347	14948424	-
MIR663AHG	chr20	26167817	26251546	-
NEAT1	chr11	65422774	65445540	+
OIP5-AS1	chr15	41283990	41309737	+
SNHG25	chr17	64145970	64146476	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE121868
Sample Source:	Blood
Source Fraction:	Plasma
Platform:	GPL11154
Method:	NGS
Num of detected RNA Type:	5
Num of detected RNAs of this Type:	2021
Sample treatment protocol:	NA
RNA Extract protocol:	total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:	TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.

Reference