exRNAdisease

General Information

Database ID:

exR0208122

RNA Name:

hsa-miR-541-3p

RNA Type:

miRNA

Chromosome:

chr14

Starnd:

Coordinate:

Start Site(bp):

101064548

End Site(bp):

101064569

External Links:

Disease Information

Disease Name:	Subarachnoid Hemorrhage
Disease Category:	Nervous System Diseases
MeSH ID:	D013345
Type:	Diseases Category/Nervous System Diseases
Alias:	SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial

Expression Detail

GEO ID:	GSE121868
Description:	Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:	Disease Sample Source
Case Disease Type:	Subarachnoid Hemorrhage
Case Disease SubType:	NA
Case Sample:	Subarachnoid Hemorrhage
Control Sample:	Blood Plasma
Number of Case:	257
Number of Control:	266
Number of Samples:	523

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
REPIN1	chr7	150368189	150374044	+
HOXD11	chr2	176104216	176109754	+
LY6E	chr8	143017982	143023832	+
FASN	chr17	82078338	82098294	-
M6PR	chr12	8940361	8949761	-
TOM1L2	chr17	17843511	17972422	-
ACACA	chr17	37084992	37406836	-
TAF4	chr20	61953469	62065810	-
MID1IP1	chrX	38801432	38806537	+
FBXO46	chr19	45710629	45730896	-
BICRA	chr19	47608196	47703277	+
CALR	chr19	12938578	12944489	+
ARHGDIA	chr17	81867721	81871378	-
UCP2	chr11	73974672	73983246	-
FKBP1A	chr20	1368978	1393172	-
SLC6A6	chr3	14402576	14489349	+
NFIX	chr19	12995608	13098796	+
ADGRL1	chr19	14147743	14206187	-
NID1	chr1	235975830	236065109	-
CAPZB	chr1	19338775	19485539	-
AGRN	chr1	1020120	1056118	+
AXL	chr19	41219223	41261766	+
MAFG	chr17	81918270	81927735	-
PKM	chr15	72199029	72231822	-
IGFBP5	chr2	216672105	216695549	-
MIGA2	chr9	129036621	129072082	+
ZMIZ1	chr10	79068966	79316528	+
PRRC2B	chr9	131373636	131500197	+
ACVR1B	chr12	51951699	51997078	+
DMWD	chr19	45782947	45792845	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000417	chr12	69644908	69656342	+
hsa_circ_0000642	chr15	80390757	80415142	+
hsa_circ_0000816	chr17	80521229	80526077	+
hsa_circ_0000643	chr15	80412669	80415142	+
hsa_circ_0000943	chr19	47421744	47440665	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC239868.1	chr1	149861271	149862504	+
AL035458.2	chr20	34234840	34281173	-
AL356488.2	chr1	109100193	109100619	+
NEAT1	chr11	65422774	65445540	+
NORAD	chr20	36045618	36051018	-
OIP5-AS1	chr15	41283990	41309737	+
STAG3L5P-PVRIG2P-PILRB	chr7	100336104	100367831	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE121868
Sample Source:	Blood
Source Fraction:	Plasma
Platform:	GPL11154
Method:	NGS
Num of detected RNA Type:	5
Num of detected RNAs of this Type:	2021
Sample treatment protocol:	NA
RNA Extract protocol:	total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:	TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.

Reference