exRNAdisease

General Information

Database ID:

exR0208342

RNA Name:

hsa-miR-654-5p

RNA Type:

miRNA

Chromosome:

chr14

Starnd:

Coordinate:

Start Site(bp):

101040234

End Site(bp):

101040255

External Links:

Disease Information

Disease Name:	Subarachnoid Hemorrhage
Disease Category:	Nervous System Diseases
MeSH ID:	D013345
Type:	Diseases Category/Nervous System Diseases
Alias:	SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial

Expression Detail

GEO ID:	GSE121868
Description:	Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:	Disease Sample Source
Case Disease Type:	Subarachnoid Hemorrhage
Case Disease SubType:	NA
Case Sample:	Subarachnoid Hemorrhage
Control Sample:	Blood Plasma
Number of Case:	257
Number of Control:	266
Number of Samples:	523

Regulatory Relationship

mRNA targets:

Gene Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
BCL9L	chr11	118893875	118925608	-
ATP11A	chr13	112690329	112887168	+
PHB	chr17	49404049	49414905	-
ZDHHC3	chr3	44915257	44976185	-
PKM	chr15	72199029	72231822	-
ATXN7L3	chr17	44191805	44200113	-
SH3PXD2A	chr10	103594027	103855543	-
ITGA5	chr12	54395261	54419266	-
TP53	chr17	7661779	7687550	-
CBFA2T3	chr16	88874858	88977207	-
CS	chr12	56271699	56300391	-
LY6E	chr8	143017982	143023832	+
SPINT1	chr15	40844018	40858207	+
AGTRAP	chr1	11736084	11754802	+
URM1	chr9	128371361	128392016	+
BCL7A	chr12	122019422	122062044	+
MEF2D	chr1	156463727	156500779	-
DHCR24	chr1	54849627	54887195	-
JADE2	chr5	134524312	134583230	+
LSM12	chr17	44034328	44067619	-
ZMIZ1	chr10	79068966	79316528	+
TOB2	chr22	41433494	41446801	-
ACTN4	chr19	38647649	38731589	+
XPO6	chr16	28097979	28211920	-
KMT2D	chr12	49018975	49059774	-
SMAD3	chr15	67063763	67195169	+
BCAM	chr19	44809071	44821421	+
IGF2BP1	chr17	48997385	49056145	+
GID4	chr17	18039408	18068405	+
NID1	chr1	235975830	236065109	-

miRNA targets:

circRNA targets:

circRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
hsa_circ_0000417	chr12	69644908	69656342	+
hsa_circ_0000642	chr15	80390757	80415142	+
hsa_circ_0000816	chr17	80521229	80526077	+
hsa_circ_0000643	chr15	80412669	80415142	+
hsa_circ_0000943	chr19	47421744	47440665	+

lncRNA targets:

lncRNA Symbol	Chromosome	Start Site(bp)	End Site(bp)	Strand
AC239868.1	chr1	149861271	149862504	+
AL035458.2	chr20	34234840	34281173	-
AL356488.2	chr1	109100193	109100619	+
NEAT1	chr11	65422774	65445540	+
NORAD	chr20	36045618	36051018	-
OIP5-AS1	chr15	41283990	41309737	+
STAG3L5P-PVRIG2P-PILRB	chr7	100336104	100367831	+
XIST	chrX	73820649	73852723	-

Display:

Experiment Detail

GEO ID:	GSE121868
Sample Source:	Blood
Source Fraction:	Plasma
Platform:	GPL11154
Method:	NGS
Num of detected RNA Type:	5
Num of detected RNAs of this Type:	2021
Sample treatment protocol:	NA
RNA Extract protocol:	total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:	TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.

Reference