Entry Detail



General Information

Database ID:exR0209090
RNA Name:AFAP1
RNA Type:mRNA
Chromosome:chr4
Starnd:-
Coordinate:
Start Site(bp):7758714End Site(bp):7939926
External Links:ENSG00000196526



Disease Information

Disease Name:Subarachnoid Hemorrhage
Disease Category:Nervous System Diseases
MeSH ID:D013345
Type:Diseases Category/Nervous System Diseases
Alias:SAH (Subarachnoid Hemorrhage)//SAHs (Subarachnoid Hemorrhage)//Hemorrhage, Subarachnoid//Hemorrhages, Subarachnoid//Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Aneurysmal//Aneurysmal Subarachnoid Hemorrhage//Aneurysmal Subarachnoid Hemorrhages//Hemorrhage, Aneurysmal Subarachnoid//Hemorrhages, Aneurysmal Subarachnoid//Subarachnoid Hemorrhages, Aneurysmal//Subarachnoid Hemorrhage, Spontaneous//Hemorrhage, Spontaneous Subarachnoid//Hemorrhages, Spontaneous Subarachnoid//Spontaneous Subarachnoid Hemorrhage//Spontaneous Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Spontaneous//Perinatal Subarachnoid Hemorrhage//Hemorrhage, Perinatal Subarachnoid//Hemorrhages, Perinatal Subarachnoid//Perinatal Subarachnoid Hemorrhages//Subarachnoid Hemorrhage, Perinatal//Subarachnoid Hemorrhages, Perinatal//Subarachnoid Hemorrhage, Intracranial//Hemorrhage, Intracranial Subarachnoid//Hemorrhages, Intracranial Subarachnoid//Intracranial Subarachnoid Hemorrhage//Intracranial Subarachnoid Hemorrhages//Subarachnoid Hemorrhages, Intracranial



Expression Detail

GEO ID:GSE121868
Description:Profiles of Extracellular RNA in Cerebrospinal Fluid and Plasma from Subarachnoid Hemorrhage Patients
Experimental Design:Disease Sample Source
Case Disease Type:Subarachnoid Hemorrhage
Case Disease SubType:NA
Case Sample:Subarachnoid Hemorrhage
Control Sample:Blood Plasma
Number of Case:257
Number of Control:266
Number of Samples:523





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RAPGEF1
chr9
131576770
131740074
-
PGAM1
chr10
97426191
97433444
+
RBX1
chr22
40951347
40973309
+
ZNF462
chr9
106863166
107013634
+
DKC1
chrX
154762742
154777689
+
PA2G4
chr12
56104537
56113910
+
NCL
chr2
231453531
231483641
-
LAMTOR2
chr1
156054782
156058506
+
GAPDH
chr12
6534512
6538374
+
EXOSC4
chr8
144078648
144080648
+
RPS14
chr5
150442635
150449739
-
WDR46
chr6
33279108
33289247
-
TCP1
chr6
159778498
159789703
-
PITX2
chr4
110617423
110642123
-
FNDC3A
chr13
48975912
49209779
+
PFN1
chr17
4945652
4949061
-
FKBP1A
chr20
1368978
1393172
-
HS6ST1
chr2
128236716
128318868
-
DTL
chr1
212035553
212107400
+
TNIK
chr3
171058414
171460408
-
GDAP1
chr8
74321130
74488872
+
ACOX3
chr4
8366282
8440723
-
YME1L1
chr10
27110112
27155266
-
ERP29
chr12
112013348
112023449
+
MT-CO1
chrMT
5904
7445
+
PABPC4
chr1
39560816
39576790
-
MT-ND2
chrMT
4470
5511
+
BOD1
chr5
173607145
173616659
-
NUCKS1
chr1
205712822
205750182
-
SPG7
chr16
89490719
89557768
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-193a-3p
chr17
31560050
31560071
+
hsa-miR-485-5p
chr14
101055427
101055448
+
hsa-miR-193b-3p
chr16
14304017
14304038
+
hsa-miR-650
chr22
22822791
22822811
+
hsa-miR-423-5p
chr17
30117095
30117117
+
hsa-miR-664b-5p
chrX
154768596
154768619
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC016876.2
chr17
7581964
7584086
-
AL355987.4
chr9
136799223
136810042
+
SNHG14
chr15
24978583
25420336
+
Display:



Experiment Detail

GEO ID:GSE121868
Sample Source:Blood
Source Fraction:Plasma
Platform:GPL11154
Method:NGS
Num of detected RNA Type:5
Num of detected RNAs of this Type:17671
Sample treatment protocol:NA
RNA Extract protocol:total RNA RNA was isolated using MiRVana Paris (Ambion).
RNA library preparation protocol:TruSeq Small RNA library prep kit (Illumina) was used. Samples were not multiplexed. Strand specificity is non-stranded. Type of starting material is total RNA.



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA