Entry Detail



General Information

Database ID:exR0268322
RNA Name:hsa-miR-671-5p
RNA Type:miRNA
Chromosome:chr7
Starnd:+
Coordinate:
Start Site(bp):151238449End Site(bp):151238471
External Links:hsa-miR-671-5p



Disease Information

Disease Name:Cystic Fibrosis
Disease Category:Congenital, Hereditary, and Neonatal Diseases and Abnormalities
MeSH ID:D003550
Type:Diseases Category/Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Alias:Fibrosis, Cystic//Mucoviscidosis//Pulmonary Cystic Fibrosis//Cystic Fibrosis, Pulmonary//Pancreatic Cystic Fibrosis//Cystic Fibrosis, Pancreatic//Fibrocystic Disease of Pancreas//Pancreas Fibrocystic Disease//Pancreas Fibrocystic Diseases//Cystic Fibrosis of Pancreas



Expression Detail

GEO ID:GSE135119
Description:Microarray profiling identifies extracellular circulating miRNAs dysregulated in cystic fibrosis
Experimental Design:Disease vs Control
Case Disease Type:Cystic Fibrosis
Case Disease SubType:NA
Case Sample:Cystic Fibrosis
Control Sample:Healthy
Number of Case:5
Number of Control:5
Number of Samples:10





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RCOR1
chr14
102592649
102730561
+
KIAA0232
chr4
6781375
6884170
+
TAF8
chr6
42050513
42087461
+
MAFG
chr17
81918270
81927735
-
DYRK1A
chr21
37365573
37526358
+
MED22
chr9
133338312
133348131
-
KLC1
chr14
103561896
103714249
+
CBX6
chr22
38861422
38872249
-
SAMD4B
chr19
39342396
39385710
+
GTSE1
chr22
46296870
46330810
+
SETD5
chr3
9397615
9479240
+
CREG1
chr1
167529117
167553805
-
IRS2
chr13
109752695
109786583
-
SCAMP3
chr1
155255979
155262430
-
CCDC6
chr10
59788747
59906556
-
BAZ2A
chr12
56595596
56636816
-
WDR82
chr3
52254434
52288020
-
TOMM6
chr6
41787662
41789898
+
FAM219A
chr9
34398184
34458570
-
STAT3
chr17
42313324
42388568
-
UHRF1BP1
chr6
34792015
34883138
+
AL365205.1
chr6
41780349
41790141
+
NACC1
chr19
13116862
13141147
+
SMAD3
chr15
67063763
67195169
+
WDTC1
chr1
27234632
27308636
+
IL1R1
chr2
102064544
102179874
+
PTPRU
chr1
29236516
29326813
+
GLYR1
chr16
4803203
4847288
-
APLP2
chr11
130068147
130144811
+
CHTF8
chr16
69118010
69132578
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC067930.1
chr8
143579636
143580670
+
AC145207.5
chr17
81878425
81881106
-
AL022311.1
chr22
37876148
37895563
+
AL137127.1
chr1
19072110
19075511
-
H19
chr11
1995176
2001470
-
KCNQ1OT1
chr11
2608328
2699994
-
LINC01278
chrX
63222993
63561095
-
MIR29B2CHG
chr1
207801518
207879115
-
NEAT1
chr11
65422774
65445540
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE135119
Sample Source:Blood
Source Fraction:Plasma
Platform:GPL19117
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2346
Sample treatment protocol:NA
RNA Extract protocol:Frozen samples; Mixture with Trizol Reagent followed by extraction with RNA Clean and Concentrator kit.
RNA library preparation protocol:Using the Affymetrix GeneChip miRNA 4.0 array, 8ul of plasma from each sample was labelled using FlashTag Biotin RNA Labelling kit.



Reference

PMID:31664087
Title:Microarray profiling identifies extracellular circulating miRNAs dysregulated in cystic fibrosis
Author:Ideozu JE, Zhang X, Rangaraj V, McColley S, Levy H
Journal:Sci Rep. 2019 Oct 29;9(1):15483.
Description:we employed microarray technology to identify aberrantly expressed plasma ECmiRNAs in CF and elucidate the functional relevance of their targets.