exRNAdisease

Entry Detail

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General Information

Database ID: exR0275724 RNA Name: hsa-miR-520d-3p RNA Type: miRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 53720149 End Site(bp): 53720170 External Links: hsa-miR-520d-3p

Disease Information

Disease Name: Advanced Adenoma Disease Category: Cancers MeSH ID: D000236 Type: Neoplasms/Neoplasms, Glandular and Epithelial Alias: Adenoma//Adenomas//Adenoma, Follicular//Adenomas, Follicular//Follicular Adenoma//Follicular Adenomas//Adenoma, Trabecular//Adenomas, Trabecular//Trabecular Adenoma//Trabecular Adenomas//Adenoma, Monomorphic//Adenomas, Monomorphic//Monomorphic Adenoma//Monomorphic Adenomas//Adenoma, Papillary//Adenomas, Papillary//Papillary Adenoma//Papillary Adenomas//Adenoma, Basal Cell//Adenomas, Basal Cell//Basal Cell Adenoma//Basal Cell Adenomas//Adenoma, Microcystic//Adenomas, Microcystic//Microcystic Adenoma//Microcystic Adenomas

Expression Detail

GEO ID: GSE25609 Description: Plasma microRNA profiling by microarray elucidates several candidate biomarkers for colorectal cancer screening Experimental Design: Cancer vs Control Case Disease Type: Advanced Adenoma Case Disease SubType: NA Case Sample: Advanced Adenoma Post surgery Control Sample: Control Number of Case: 20 Number of Control: 20 Number of Samples: 40

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CAMK2N1 chr1 20482391 20486210 - KIAA1522 chr1 32741830 32774970 + RGMA chr15 93035273 93089204 - APP chr21 25880550 26171128 - ATP6V1B2 chr8 20197381 20226819 + CUL1 chr7 148697914 148801110 + WASF3 chr13 26557683 26688948 + ATP6V1C1 chr8 103021063 103073051 + FYCO1 chr3 45917899 45995824 - DIP2A chr21 46458891 46570015 + LONP2 chr16 48244300 48363122 + ARL4A chr7 12686856 12690958 + ZSCAN26 chr6 28267010 28278224 + PLAGL2 chr20 32192504 32207743 - MLLT1 chr19 6210381 6279975 - SRRT chr7 100875103 100888664 + AMPD2 chr1 109616104 109632053 + GLCE chr15 69160584 69272217 + ZFAND4 chr10 45615500 45672780 - MTF1 chr1 37809574 37859592 - FAM102A chr9 127940582 127980989 - CCDC93 chr2 117915478 118014133 - VLDLR chr9 2621787 2660056 + ATXN1 chr6 16299112 16761491 - PHC3 chr3 170086732 170181749 - CELF2 chr10 10798397 11336675 + SCAMP2 chr15 74843730 74873365 - SEMA3C chr7 80742538 80922359 - CHD9 chr16 53055033 53329150 + MNT chr17 2384073 2401104 - miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0000943 chr19 47421744 47440665 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AL049840.4 chr14 103694516 103695050 - ARHGAP27P1-BPTFP1-KPNA2P3 chr17 64749663 64781707 - FGD5-AS1 chr3 14920347 14948424 - MIR17HG chr13 91347820 91354579 + NEAT1 chr11 65422774 65445540 + NORAD chr20 36045618 36051018 - SNHG16 chr17 76557764 76565348 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE25609 Sample Source: Blood Source Fraction: Plasma Platform: GPL8179 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 826 Sample treatment protocol: Briefly, samples were centrifuged at 1,600×g for 10 min at 4 ºC to spin down blood cells, and plasma was transferred into new tubes, followed by further centrifugation at 16,000×g for 10 minutes at 4ºC to completely remove cellular components. RNA Extract protocol: NA RNA library preparation protocol: Biotinylated cDNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit (Ambion).

Reference

PMID: 23267864 Title: Circulating microRNAs as biomarkers of colorectal cancer: results from a genome-wide profiling and validation study Author: Gir¨¢ldez MD, Lozano JJ, Ram¨ªrez G, Hijona E, Bujanda L, Castells A, Gironella M Journal: Clin Gastroenterol Hepatol. 2013 Jun;11(6):681-8.e3. Description: We investigated whether plasma levels of miRNA can differentiate patients with CRC from healthy individuals. We also investigated whether plasma samples from patients with premalignant neoplastic lesions, such as advanced adenomas (AAs), also had a different expression pattern of miRNAs.