Entry Detail



General Information

Database ID:exR0326695
RNA Name:hsa-miR-1270
RNA Type:miRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):20399320End Site(bp):20399342
External Links:hsa-miR-1270



Disease Information

Disease Name:Cholelithiasis
Disease Category:Digestive System Diseases
MeSH ID:D002769
Type:Diseases Category/Digestive System Diseases
Alias:Cholelithiases



Expression Detail

GEO ID:GSE85589
Description:Expression data from pancreatic cancers patients and healthy controls
Experimental Design:Cancer vs Control
Case Disease Type:Cholelithiasis
Case Disease SubType:NA
Case Sample:Cholelithiasis
Control Sample:Healthy
Number of Case:10
Number of Control:19
Number of Samples:29





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
MIEF1
chr22
39499432
39518132
+
WIPF2
chr17
40219304
40284136
+
GBA2
chr9
35736866
35749228
-
HIF1AN
chr10
100529072
100559998
+
TCF12
chr15
56918623
57299281
+
CDC42EP2
chr11
65314866
65322417
+
LITAF
chr16
11547722
11636381
-
GRHL2
chr8
101492439
101669726
+
PRLR
chr5
35048756
35230487
-
PATL1
chr11
59636716
59669037
-
CACNG4
chr17
66964707
67033398
+
ZNF652
chr17
49289206
49362473
-
CDC37
chr19
10391133
10420121
-
AGFG1
chr2
227472152
227561214
+
SMG7
chr1
183472216
183598246
+
TRIP6
chr7
100867387
100873454
+
FN1
chr2
215360440
215436073
-
DCBLD2
chr3
98795941
98901695
-
BEND3
chr6
107065182
107115269
-
NACC1
chr19
13116862
13141147
+
TPM4
chr19
16067021
16103002
+
TLNRD1
chr15
81000923
81005788
+
SRGAP2
chr1
206203345
206464443
+
PITPNA
chr17
1517718
1562792
-
FAM78A
chr9
131258076
131276510
-
ATP6V1B2
chr8
20197381
20226819
+
VGF
chr7
101162509
101165569
-
PLAGL2
chr20
32192504
32207743
-
PCDH10
chr4
133149294
133208606
+
B4GALT5
chr20
49632945
49713878
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0001247
chr22
46125304
46136418
+
hsa_circ_0001159
chr20
40161688
40179999
-
hsa_circ_0000471
chr13
33091993
33101669
-
hsa_circ_0001666
chr6
170626457
170639638
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC239868.1
chr1
149861271
149862504
+
AC245033.4
chr15
82533175
82540008
-
AP000233.2
chr21
25095022
25103670
+
MALAT1
chr11
65497688
65506516
+
NEAT1
chr11
65422774
65445540
+
NORAD
chr20
36045618
36051018
-
NR2F2-AS1
chr15
96110040
96327361
-
OIP5-AS1
chr15
41283990
41309737
+
SNHG12
chr1
28578538
28583132
-
SNHG8
chr4
118278709
118285316
+
XIST
chrX
73820649
73852723
-
Display:



Experiment Detail

GEO ID:GSE85589
Sample Source:Blood
Source Fraction:Serum
Platform:GPL19117
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2546
Sample treatment protocol:Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm.
RNA Extract protocol:Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea).
RNA library preparation protocol:Biotin RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA