exRNAdisease

Entry Detail

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General Information

Database ID: exR0326916 RNA Name: hsa-miR-200c-3p RNA Type: miRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 6963742 End Site(bp): 6963764 External Links: hsa-miR-200c-3p

Disease Information

Disease Name: Cholelithiasis Disease Category: Digestive System Diseases MeSH ID: D002769 Type: Diseases Category/Digestive System Diseases Alias: Cholelithiases

Expression Detail

GEO ID: GSE85589 Description: Expression data from pancreatic cancers patients and healthy controls Experimental Design: Cancer vs Control Case Disease Type: Cholelithiasis Case Disease SubType: NA Case Sample: Cholelithiasis Control Sample: Healthy Number of Case: 10 Number of Control: 19 Number of Samples: 29

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CHD9 chr16 53055033 53329150 + CTNND1 chr11 57753243 57819546 + FOXP1 chr3 70952817 71583993 - GPR180 chr13 94601857 94634661 + KLF3 chr4 38664197 38701517 + NRBP1 chr2 27427790 27442259 + NRIP1 chr21 14961235 15065936 - PTP4A1 chr6 63521746 63583436 + RBM12 chr20 35648925 35664956 - SLC35B4 chr7 134289332 134316930 - SMAD7 chr18 48919853 48952052 - SRP72 chr4 56467617 56503681 + THAP2 chr12 71664301 71680644 + XPO4 chr13 20777329 20903048 - AC008982.1 chr19 38817471 38840178 - CASD1 chr7 94509219 94557019 + CEBPZ chr2 37201612 37231596 - ECH1 chr19 38815422 38831841 - PSMB2 chr1 35599541 35641526 - SNX5 chr20 17941597 17968980 - SZRD1 chr1 16352575 16398145 + WDR13 chrX 48590042 48608869 + ZNF217 chr20 53567065 53609907 - miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0001731 chr7 100731990 100738448 + hsa_circ_0001486 chr5 56526672 56527148 + hsa_circ_0000552 chr14 71880664 71948928 + hsa_circ_0001358 chr3 169694733 169706147 + lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC024940.6 chr12 31280422 31280895 - AC092295.2 chr19 36489649 36491040 + AC116913.1 chr15 66488658 66492109 - AF254983.1 chr21 10482738 10605716 + AL049840.4 chr14 103694516 103695050 - LINC00667 chr18 5237826 5290608 + MALAT1 chr11 65497688 65506516 + NEAT1 chr11 65422774 65445540 + OIP5-AS1 chr15 41283990 41309737 + SNHG22 chr18 49814023 49851059 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE85589 Sample Source: Blood Source Fraction: Serum Platform: GPL19117 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 2546 Sample treatment protocol: Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm. RNA Extract protocol: Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea). RNA library preparation protocol: Biotin RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA