Entry Detail



General Information

Database ID:exR0327222
RNA Name:hsa-miR-33a-5p
RNA Type:miRNA
Chromosome:chr22
Starnd:+
Coordinate:
Start Site(bp):41900949End Site(bp):41900969
External Links:hsa-miR-33a-5p



Disease Information

Disease Name:Cholelithiasis
Disease Category:Digestive System Diseases
MeSH ID:D002769
Type:Diseases Category/Digestive System Diseases
Alias:Cholelithiases



Expression Detail

GEO ID:GSE85589
Description:Expression data from pancreatic cancers patients and healthy controls
Experimental Design:Cancer vs Control
Case Disease Type:Cholelithiasis
Case Disease SubType:NA
Case Sample:Cholelithiasis
Control Sample:Healthy
Number of Case:10
Number of Control:19
Number of Samples:29





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
RBM33
chr7
155644451
155781485
+
ARCN1
chr11
118572390
118603033
+
CROT
chr7
87345681
87399795
+
PIM1
chr6
37170152
37175428
+
BRIP1
chr17
61679139
61863528
-
RAB11FIP2
chr10
118004916
118046941
-
ECHDC1
chr6
127288712
127343609
-
NFAT5
chr16
69565094
69704666
+
ZBTB34
chr9
126860665
126885878
+
EIF5A2
chr3
170888418
170908644
-
XRN1
chr3
142306607
142448062
-
WDFY3
chr4
84669610
84966391
-
CERK
chr22
46684410
46738252
-
IGF1R
chr15
98648539
98964530
+
MYO19
chr17
36495633
36543435
-
E2F3
chr6
20401879
20493714
+
AFF4
chr5
132875395
132963634
-
DDX5
chr17
64498254
64508199
-
RCAN1
chr21
34513142
34615113
-
GLCCI1
chr7
7968796
8094272
+
ROBO1
chr3
78597239
79767998
-
RNF11
chr1
51236273
51273447
+
AFF3
chr2
99545419
100192428
-
ZDHHC9
chrX
129803288
129843909
-
ADCY9
chr16
3953387
4116442
-
ZFYVE16
chr5
80408013
80483379
+
ZNF148
chr3
125225561
125375354
-
MAPK1IP1L
chr14
55051647
55070194
+
CREM
chr10
35126791
35212958
+
KPNA4
chr3
160495007
160565571
-
miRNA targets:NA
circRNA targets:
circRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa_circ_0000540
chr14
55799534
55821940
+
hsa_circ_0001349
chr3
152132729
152150709
+
hsa_circ_0000642
chr15
80390757
80415142
+
hsa_circ_0000643
chr15
80412669
80415142
+
hsa_circ_0000284
chr11
33307958
33309057
+
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC023509.1
chr12
53441741
53467528
+
DANCR
chr4
52712404
52720351
+
FGD5-AS1
chr3
14920347
14948424
-
MCF2L-AS1
chr13
112967484
112968824
-
NEAT1
chr11
65422774
65445540
+
Display:



Experiment Detail

GEO ID:GSE85589
Sample Source:Blood
Source Fraction:Serum
Platform:GPL19117
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:2546
Sample treatment protocol:Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm.
RNA Extract protocol:Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea).
RNA library preparation protocol:Biotin RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA