exRNAdisease

Entry Detail

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General Information

Database ID: exR0328070 RNA Name: hsa-miR-5094 RNA Type: miRNA Chromosome: chr15 Starnd: - Coordinate: Start Site(bp): 89850690 End Site(bp): 89850711 External Links: hsa-miR-5094

Disease Information

Disease Name: Cholelithiasis Disease Category: Digestive System Diseases MeSH ID: D002769 Type: Diseases Category/Digestive System Diseases Alias: Cholelithiases

Expression Detail

GEO ID: GSE85589 Description: Expression data from pancreatic cancers patients and healthy controls Experimental Design: Cancer vs Control Case Disease Type: Cholelithiasis Case Disease SubType: NA Case Sample: Cholelithiasis Control Sample: Healthy Number of Case: 10 Number of Control: 19 Number of Samples: 29

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ZNHIT3 chr17 36486629 36499310 + miRNA targets: NA circRNA targets: circRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa_circ_0001454 chr4 154524454 154533552 + hsa_circ_0001005 chr2 53921020 53978078 - hsa_circ_0000384 chr12 27867712 27877119 + hsa_circ_0001159 chr20 40161688 40179999 - hsa_circ_0000698 chr16 47531309 47549512 + hsa_circ_0001445 chr4 144464661 144465125 + hsa_circ_0000943 chr19 47421744 47440665 + hsa_circ_0001667 chr7 810107 814799 + hsa_circ_0001376 chr3 194169185 194175121 - lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC074117.1 chr2 27356246 27367622 + AL356488.2 chr1 109100193 109100619 + AL359091.1 chr9 128392007 128393510 - DSCAM-AS1 chr21 40383083 40385358 + FTX chrX 73940435 74293574 - GAS5 chr1 173858559 173868882 - NEAT1 chr11 65422774 65445540 + NUTM2B-AS1 chr10 79661394 79826594 - PDCD4-AS1 chr10 110869868 110872233 - SNHG3 chr1 28505980 28510892 + XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE85589 Sample Source: Blood Source Fraction: Serum Platform: GPL19117 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 2546 Sample treatment protocol: Serum samples were collected in 10-mL BD serum tubes and centrifuged at 4°C for 20 minutes at 3000 rpm. RNA Extract protocol: Total RNA containing miRNA was extracted from the serum samples using the Serum miRNA purification kit (Genolution, Seoul, Korea). RNA library preparation protocol: Biotin RNA samples (130 ng) were labelled using the FlashTag™ Biotin RNA Labeling Kit (Genisphere, Hatfield, PA).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA