Entry Detail



General Information

Database ID:exR0354977
RNA Name:AGAP11
RNA Type:lncRNA
Chromosome:chr10
Starnd:+
Coordinate:
Start Site(bp):86970741End Site(bp):87010126
External Links:ENSG00000271880



Disease Information

Disease Name:Rheumatoid Arthritis
Disease Category:Musculoskeletal Diseases
MeSH ID:D001172
Type:Diseases Category/Musculoskeletal Diseases
Alias:Arthritis, Rheumatoid//Rheumatoid Arthritis



Expression Detail

GEO ID:GSE94519
Description:Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:Disease vs Control
Case Disease Type:Rheumatoid Arthritis
Case Disease SubType:NA
Case Sample:Rheumatoid Arthritis
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
AGAP1
chr2
235494043
236131800
+
AGAP4
chr10
45825594
45853875
-
AGAP5
chr10
73674285
73698159
-
AGAP9
chr10
47501854
47523638
-
ANKRD52
chr12
56237807
56258384
-
ASXL1
chr20
32358330
32439319
+
BMS1
chr10
42782795
42834937
+
CHTF8
chr16
69118010
69132578
-
FZD9
chr7
73433778
73436120
+
HNRNPA1
chr12
54280193
54287088
+
KPTN
chr19
47475150
47484265
-
PGPEP1
chr19
18340598
18369950
+
PIGS
chr17
28553383
28571794
-
PRRC2A
chr6
31620715
31637771
+
RARS2
chr6
87513938
87589987
-
RCOR1
chr14
102592649
102730561
+
SEMA3C
chr7
80742538
80922359
-
TNPO2
chr19
12699194
12724011
-
TPM2
chr9
35681992
35690056
-
WDR73
chr15
84639281
84654343
-
miRNA targets:NA
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC022400.3
chr10
73674295
73730466
-
AL136982.1
chr10
86992406
87010203
+
AL512662.2
chr10
79904898
79951029
+
SNHG11
chr20
38446343
38450940
+
Display:



Experiment Detail

GEO ID:GSE94519
Sample Source:Blood
Source Fraction:Serum
Platform:GPL20115
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1224
Sample treatment protocol:All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA