Entry Detail



General Information

Database ID:exR0355010
RNA Name:AP000233.2
RNA Type:lncRNA
Chromosome:chr21
Starnd:+
Coordinate:
Start Site(bp):25095022End Site(bp):25103670
External Links:ENSG00000232512



Disease Information

Disease Name:Rheumatoid Arthritis
Disease Category:Musculoskeletal Diseases
MeSH ID:D001172
Type:Diseases Category/Musculoskeletal Diseases
Alias:Arthritis, Rheumatoid//Rheumatoid Arthritis



Expression Detail

GEO ID:GSE94519
Description:Long noncoding RNAs expression profile in patients with rheumatoid arthritis
Experimental Design:Disease vs Control
Case Disease Type:Rheumatoid Arthritis
Case Disease SubType:NA
Case Sample:Rheumatoid Arthritis
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ACTR5
chr20
38748460
38772520
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-620
chr12
116148575
116148594
-
hsa-miR-1270
chr19
20399320
20399342
-
hsa-miR-1321
chrX
85835832
85835849
+
hsa-miR-1193
chr14
101030061
101030083
+
hsa-miR-3179
chr16
18411905
18411926
-
hsa-miR-3194-5p
chr20
51452948
51452968
-
hsa-miR-3909
chr22
35335710
35335731
+
hsa-miR-4739
chr17
79707216
79707240
-
hsa-miR-4756-5p
chr20
54068452
54068474
-
hsa-miR-766-5p
chrX
119646799
119646820
-
hsa-miR-6852-3p
chr9
35710684
35710700
-
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC005746.1
chr17
61382785
61384680
+
AC067930.1
chr8
143579636
143580670
+
Display:



Experiment Detail

GEO ID:GSE94519
Sample Source:Blood
Source Fraction:Serum
Platform:GPL20115
Method:Microarray
Num of detected RNA Type:1
Num of detected RNAs of this Type:1224
Sample treatment protocol:All blood samples were separately collected and sequentially centrifuged at 2000 rpm for 10 min. The cell-free serum from the supernatant was stored at -80°C for further detection.
RNA Extract protocol:RNA was prepared using the Versagene Blood RNA Purification kit (Gentra Systems, Minneapolis MN).
RNA library preparation protocol:Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).



Reference

PMID:NA
Title:NA
Author:NA
Journal:NA
Description:NA