exRNAdisease

Entry Detail

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General Information

Database ID: exR0373399 RNA Name: AASDHPPT RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 106075501 End Site(bp): 106098699 External Links: ENSG00000149313

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand GTF2F2 chr13 45120510 45284893 + CFL1 chr11 65823022 65862026 - NUP93 chr16 56730118 56850286 + HSD17B8 chr6 33204655 33206831 + RPL3 chr22 39312882 39320389 - RASSF3 chr12 64507001 64697564 + TMBIM6 chr12 49707725 49764934 + HNRNPL chr19 38836388 38852347 - CXXC4 chr4 104468308 104494901 - PSME3 chr17 42824385 42843760 + AHCY chr20 34280268 34311802 - ESRP1 chr8 94641074 94707466 + AKAP10 chr17 19904302 19978343 - PCLAF chr15 64364304 64387687 - COA3 chr17 42795147 42798704 - MTA2 chr11 62593214 62601865 - EIF4G2 chr11 10797050 10808940 - WDR73 chr15 84639281 84654343 - PUM2 chr2 20248691 20352234 - GTPBP6 chrX 304529 318819 - NAP1L4 chr11 2944431 2992377 - MATR3 chr5 139273752 139331671 + IRF7 chr11 612553 615983 - SINHCAF chr12 31280584 31327058 - RAB8A chr19 16111889 16134234 + SPG21 chr15 64963022 64990310 - PANK3 chr5 168548495 168579368 - DIAPH1 chr5 141515016 141619055 - RPS29 chr14 49570984 49599164 - HMGA1 chr6 34236873 34246231 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC064807.1 chr8 51899268 51949874 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA