exRNAdisease

Entry Detail

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General Information

Database ID: exR0373403 RNA Name: ABAT RNA Type: mRNA Chromosome: chr16 Starnd: + Coordinate: Start Site(bp): 8674596 End Site(bp): 8784575 External Links: ENSG00000183044

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ARFIP2 chr11 6474683 6481479 - BTNL9 chr5 181040225 181061521 + ESRP1 chr8 94641074 94707466 + HNRNPA1P48 chr16 51553436 51647132 + LSM14B chr20 62122461 62135374 + MEA1 chr6 43011143 43016868 - PTCD2 chr5 72320367 72368395 + RHBDF2 chr17 76470891 76501790 - RPS28 chr19 8321158 8323340 + RPS6 chr9 19375715 19380236 - SENP6 chr6 75601509 75718281 + SNRPD2 chr19 45687454 45692569 - SP2 chr17 47896150 47928957 + SPTLC1 chr9 92000087 92115413 - TMEM9 chr1 201134772 201171574 - USP7 chr16 8892097 8975328 - ZBTB11 chr3 101648889 101677132 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-485-5p chr14 101055427 101055448 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand ALDH1L1-AS2 chr3 126180012 126210169 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA