exRNAdisease

Entry Detail

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General Information

Database ID: exR0373416 RNA Name: ABCB10 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 229516582 End Site(bp): 229558707 External Links: ENSG00000135776

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand PKN1 chr19 14433053 14471867 + HELQ chr4 83407343 83455855 - MBOAT7 chr19 54173412 54189882 - RPL32 chr3 12834485 12841582 - DUSP16 chr12 12473282 12562863 - CBX6 chr22 38861422 38872249 - FOXK1 chr7 4682295 4771442 + NISCH chr3 52455118 52493068 + MTA1 chr14 105419820 105470729 + METTL9 chr16 21597218 21657473 + ESPL1 chr12 53268299 53293638 + NPHP4 chr1 5862811 5992473 - GAREM1 chr18 32124877 32470882 - RPS3 chr11 75399515 75422280 + NELL2 chr12 44508275 44921848 - VPS13D chr1 12230030 12512047 + BRWD1 chr21 39184176 39321559 - PRELID1 chr5 177303799 177306949 + NAT10 chr11 34105617 34147670 + HTATSF1 chrX 136497079 136512346 + GAN chr16 81314966 81380198 + PUS3 chr11 125893485 125903221 - CLPTM1 chr19 44954585 44993341 + DPP9 chr19 4675224 4724673 - CCZ1 chr7 5898725 5926550 + SLC37A4 chr11 119024114 119030906 - MLEC chr12 120687149 120701859 + BRSK2 chr11 1389899 1462689 + MAP4 chr3 47850690 48089272 - PI4KB chr1 151291797 151327715 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand SNHG4 chr5 139274102 139284899 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA