exRNAdisease

Entry Detail

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General Information

Database ID: exR0373420 RNA Name: ABCB6 RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 219209772 End Site(bp): 219218994 External Links: ENSG00000115657

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CLCN5 chrX 49922596 50099235 + CHMP1A chr16 89644435 89657721 - COA1 chr7 43608456 43729717 - PA2G4 chr12 56104537 56113910 + PYCR2 chr1 225919877 225924340 - HLA-E chr6 30489509 30494194 + SNRPD2 chr19 45687454 45692569 - GADD45GIP1 chr19 12953119 12957223 - VCL chr10 73995193 74121363 + SNRPD3 chr22 24555958 24582052 + FARSA chr19 12922479 12934037 - SMDT1 chr22 42079691 42084284 + EEF2 chr19 3976056 3985463 - POU3F3 chr2 104853287 104858574 + GRK2 chr11 67266473 67286556 + GAPDH chr12 6534512 6538374 + WSB1 chr17 27294076 27315926 + MYCBP2 chr13 77044657 77327094 - SAC3D1 chr11 65040901 65044828 + PPP4C chr16 30075978 30085376 + KRT7 chr12 52232520 52252186 + AC068946.2 chr2 219209772 219222738 - PTPRS chr19 5158495 5340803 - SETD1B chr12 121804180 121832584 + ARID1B chr6 156776020 157210779 + CAMK2G chr10 73812501 73874591 - POU6F1 chr12 51186936 51217708 - PFN1 chr17 4945652 4949061 - LAMP1 chr13 113297239 113323672 + RAD51D chr17 35092208 35121522 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA