exRNAdisease

Entry Detail

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General Information

Database ID: exR0373421 RNA Name: ABCB7 RNA Type: mRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 75051048 End Site(bp): 75156732 External Links: ENSG00000131269

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand YWHAZ chr8 100916523 100953388 - DDX5 chr17 64498254 64508199 - MAPKAPK2 chr1 206684944 206734283 + YWHAQ chr2 9583967 9630997 - MT-CO1 chrMT 5904 7445 + CSNK2B chr6 31665236 31670343 + MAGED1 chrX 51803007 51902357 + PBX2 chr6 32184733 32190202 - CCNI chr4 77047155 77075989 - CFL1 chr11 65823022 65862026 - TM7SF3 chr12 26971579 27014434 - ADD1 chr4 2843857 2930076 + AP002990.1 chr11 62559603 62591531 - RARA chr17 40309180 40357643 + RPAIN chr17 5419641 5432876 + RPS12 chr6 132814569 132817564 + IPO5 chr13 97953658 98024296 + NOMO3 chr16 16232528 16294811 + JMJD1C chr10 63167221 63521850 - MEN1 chr11 64803510 64811294 - RAB11A chr15 65726054 65891989 + P4HB chr17 81843161 81860624 - EEF1G chr11 62559596 62574086 - TMSB4X chrX 12975110 12977227 + CAPN15 chr16 527712 554636 + RABEP1 chr17 5282265 5386340 + LPCAT1 chr5 1456480 1523962 - INSIG1 chr7 155297776 155310235 + ANP32B chr9 97983341 98015943 + TMED5 chr1 93149742 93180516 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand EBLN3P chr9 37079645 37090928 + LINC00205 chr21 45288050 45297806 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA