exRNAdisease

Entry Detail

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General Information

Database ID: exR0373444 RNA Name: ABCG2 RNA Type: mRNA Chromosome: chr4 Starnd: - Coordinate: Start Site(bp): 88090150 End Site(bp): 88231628 External Links: ENSG00000118777

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand PTMS chr12 6765516 6770952 + AP2B1 chr17 35578046 35726413 + PFN1 chr17 4945652 4949061 - ACKR3 chr2 236567787 236582354 + RFX5 chr1 151340640 151347357 - SUPT16H chr14 21351476 21384019 - ABHD14A-ACY1 chr3 51974706 51989183 + PLXNA2 chr1 208022242 208244384 - PDXDC1 chr16 14974591 15139339 + SDC2 chr8 96493813 96611790 + MORN3 chr12 121648742 121672631 - RARB chr3 25174332 25597932 + GNPDA1 chr5 141991749 142013041 - TPT1 chr13 45333471 45341370 - ZNRF2 chr7 30284597 30367689 + PSMA5 chr1 109399042 109426448 - ELF1 chr13 40931924 41061440 - PDHB chr3 58427630 58433857 - PSMA4 chr15 78540405 78552417 + CCND3 chr6 41934933 42050357 - NELFA chr4 1982717 2041903 - RPS3 chr11 75399515 75422280 + MTRNR2L12 chr3 96617188 96618236 - NMD3 chr3 161104696 161253532 + UGT3A2 chr5 36035021 36071358 - AFF4 chr5 132875395 132963634 - HNRNPA2B1 chr7 26173057 26201529 - CDH1 chr16 68737292 68835541 + SIPA1L1 chr14 71320449 71741229 + RPL9 chr4 39452521 39458949 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC078881.1 chr4 177442519 177681381 + AC069287.1 chr11 112967 125927 - NR2F1-AS1 chr5 93360779 93585649 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA