exRNAdisease

Entry Detail

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General Information

Database ID: exR0373453 RNA Name: ABHD13 RNA Type: mRNA Chromosome: chr13 Starnd: + Coordinate: Start Site(bp): 108218392 End Site(bp): 108234243 External Links: ENSG00000139826

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ANKRD46 chr8 100509752 100559784 - ARMT1 chr6 151452258 151470101 + CCR7 chr17 40553769 40565472 - CHIC1 chrX 73563200 73687102 + CUL4A chr13 113208193 113267108 + HDAC2 chr6 113933028 114011308 - HSPA4 chr5 133052013 133106449 + IDH1 chr2 208236227 208266074 - LIN28A chr1 26410817 26429728 + MRI1 chr19 13764522 13774282 + MT-ND4 chrMT 10760 12137 + PPM1G chr2 27381195 27409591 - RAB18 chr10 27504174 27542237 + RAB7A chr3 128726183 128814798 + RCN2 chr15 76931738 76954393 + RHEB chr7 151466012 151520120 - RHOT1 chr17 32142454 32253374 + RNF138 chr18 32091874 32131561 + SCAMP3 chr1 155255979 155262430 - SSRP1 chr11 57325986 57335892 - STIM2 chr4 26857601 27025381 + SV2A chr1 149903318 149917844 - TRIP6 chr7 100867387 100873454 + U2AF1 chr21 43092956 43107587 - U2AF1L5 chr21 6484623 6499261 - UBR4 chr1 19074510 19210266 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA