exRNAdisease

Entry Detail

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General Information

Database ID: exR0373456 RNA Name: ABHD14B RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 51968510 End Site(bp): 51983409 External Links: ENSG00000114779

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FTL chr19 48965309 48966879 + SMARCD1 chr12 50085200 50100707 + UTP3 chr4 70688532 70690551 + RPL13A chr19 49487554 49492308 + NELFB chr9 137255327 137273542 + HLA-DPB1 chr6 33075990 33089696 + RIC8A chr11 207511 215113 + GATD1 chr11 767220 777488 - AC010422.3 chr19 12643831 12648397 - RTCA chr1 100266207 100292769 + CCDC86 chr11 60842113 60851081 + ZNF160 chr19 53066606 53103436 - RHOA chr3 49359145 49412998 - RPL37 chr5 40825262 40835222 - EEF2 chr19 3976056 3985463 - RPS6 chr9 19375715 19380236 - JOSD2 chr19 50505998 50511353 - SSRP1 chr11 57325986 57335892 - PABPC1 chr8 100685816 100722809 - PCBP4 chr3 51957454 51974016 - RABGEF1 chr7 66682164 66811464 + GIMAP1-GIMAP5 chr7 150716668 150743646 + NDUFA2 chr5 140638740 140647785 - AGTPBP1 chr9 85546539 85742029 - TRA2B chr3 185914558 185938103 - UGT8 chr4 114598770 114678225 + VCL chr10 73995193 74121363 + SLC25A39 chr17 44319625 44324870 - AC027644.4 chr7 66628958 66811189 + DLX1 chr2 172084740 172089677 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-1286 chr22 20249145 20249165 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC115284.1 chr3 51961212 51974031 - ZFAS1 chr20 49278178 49299600 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA