exRNAdisease

Entry Detail

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General Information

Database ID: exR0373471 RNA Name: ABI3 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 49210411 End Site(bp): 49223225 External Links: ENSG00000108798

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010422.3 chr19 12643831 12648397 - ANKRD46 chr8 100509752 100559784 - CDC37 chr19 10391133 10420121 - CFLAR chr2 201116154 201176687 + ETAA1 chr2 67397322 67412089 + GRK2 chr11 67266473 67286556 + HSPA8 chr11 123057489 123063230 - LMNB2 chr19 2427638 2456959 - MSN chrX 65588377 65741931 + MYL6B chr12 56152256 56159647 + PBK chr8 27809624 27838082 - PPP1R32 chr11 61481120 61490931 + PPP4C chr16 30075978 30085376 + PTDSS2 chr11 448268 491399 + RHOG chr11 3826978 3840959 - RPL8 chr8 144789765 144792587 - RPS8 chr1 44775251 44778779 + SKP1 chr5 134148935 134177038 - TMEM216 chr11 61392360 61398863 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA