exRNAdisease

Entry Detail

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General Information

Database ID: exR0373481 RNA Name: ABRACL RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 139028745 End Site(bp): 139043302 External Links: ENSG00000146386

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand FGFBP3 chr10 91906584 91909486 - RPL11 chr1 23691742 23696835 + STIL chr1 47250139 47314147 - BIRC6 chr2 32357028 32618899 + EIF4A1 chr17 7572706 7579006 + REPIN1 chr7 150368189 150374044 + UBE2I chr16 1308880 1327018 + UTP18 chr17 51260546 51297936 + EZR chr6 158765741 158819368 - RPS5 chr19 58386400 58394806 + NUCKS1 chr1 205712822 205750182 - APLP2 chr11 130068147 130144811 + POMT1 chr9 131502902 131523806 + DCLRE1B chr1 113905213 113914086 + MIF chr22 23894383 23895227 + CALR chr19 12938578 12944489 + XPO7 chr8 21919662 22006585 + GOT1 chr10 99396870 99430624 - TUBB chr6 30720352 30725426 + MEX3A chr1 156072013 156082465 - PXMP2 chr12 132687587 132704985 + BABAM1 chr19 17267376 17281249 + HSPB8 chr12 119178642 119221131 + PER1 chr17 8140472 8156506 - DHX32 chr10 125836337 125896436 - APP chr21 25880550 26171128 - SLC38A2 chr12 46358188 46372773 - NEDD9 chr6 11183298 11382348 - S100A16 chr1 153606886 153613145 - SENP3-EIF4A1 chr17 7563287 7578715 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-205-5p chr1 209432166 209432187 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AL035458.2 chr20 34234840 34281173 - AC135586.2 chr12 132688049 132714912 + AL359924.1 chr1 237862175 237928321 + AP006621.3 chr11 777578 784297 + MAPKAPK5-AS1 chr12 111839764 111842902 - NEAT1 chr11 65422774 65445540 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA