exRNAdisease

Entry Detail

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General Information

Database ID: exR0373484 RNA Name: ABTB2 RNA Type: mRNA Chromosome: chr11 Starnd: - Coordinate: Start Site(bp): 34150987 End Site(bp): 34358010 External Links: ENSG00000166016

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACAA2 chr18 49782164 49813953 - AL136454.1 chr1 192716132 192716653 + ATE1 chr10 121740421 121928801 - CEP104 chr1 3812086 3857214 - CYP4X1 chr1 47023669 47050751 + ECE1 chr1 21217247 21345572 - EEF2 chr19 3976056 3985463 - FAM118A chr22 45308968 45341955 + FASN chr17 82078338 82098294 - GAPDH chr12 6534512 6538374 + ID3 chr1 23557926 23559501 - KRAS chr12 25205246 25250936 - NPAT chr11 108157215 108222638 - PDIA4 chr7 149003062 149028662 - PHC3 chr3 170086732 170181749 - PTTG1IP chr21 44849585 44873903 - RAB1B chr11 66268590 66277492 + RBBP4 chr1 32651142 32686211 + RPL22 chr1 6185020 6209389 - RPS18 chr6 33272075 33276511 + RUSC1 chr1 155320894 155331114 + SERP1 chr3 150541998 150603228 - SHISA5 chr3 48467798 48504826 - SRGN chr10 69088103 69104805 + SRP68 chr17 76038775 76072517 - STAT6 chr12 57095408 57132139 - TBC1D2B chr15 77984036 78077724 - TUBB chr6 30720352 30725426 + TWNK chr10 100987367 100994403 + ZFYVE9 chr1 52142094 52346686 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AP003392.4 chr11 119065263 119065677 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA