exRNAdisease

Entry Detail

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General Information

Database ID: exR0373485 RNA Name: ACAA1 RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 38103129 End Site(bp): 38137242 External Links: ENSG00000060971

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand NDUFS8 chr11 68030617 68036644 + SYNGR2 chr17 78168558 78173527 + ATXN7L2 chr1 109483479 109492804 + EIF3B chr7 2354086 2380745 + MARCKSL1 chr1 32333839 32336233 - COTL1 chr16 84565596 84618078 - ZNF331 chr19 53519527 53580269 + RPS3 chr11 75399515 75422280 + ICMT chr1 6221193 6235972 - ZFHX3 chr16 72782885 73891871 - TPP1 chr11 6612768 6619448 - RPL37A chr2 216498825 216579180 + TIMP2 chr17 78852977 78925387 - ST6GAL1 chr3 186930502 187078553 + DCTN5 chr16 23641466 23677472 + PTOV1 chr19 49850735 49860744 + KCTD13 chr16 29905012 29926236 - TRAP1 chr16 3651639 3717553 - CEP295NL chr17 78870910 78903217 - RPL11 chr1 23691742 23696835 + LMNB1 chr5 126776623 126837020 + MRPS27 chr5 72219409 72320646 - DDX3Y chrY 12904108 12920478 + NPNT chr4 105894775 106004027 + MTRNR2L12 chr3 96617188 96618236 - LIN28A chr1 26410817 26429728 + MPRIP chr17 17042545 17217679 + HDAC1 chr1 32292083 32333635 + ZBTB40 chr1 22428838 22531157 + RPS4X chrX 72255679 72277248 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4449 chr4 52712720 52712741 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA