exRNAdisease

Entry Detail

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General Information

Database ID: exR0373488 RNA Name: ACACB RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 109116595 End Site(bp): 109268226 External Links: ENSG00000076555

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CALM1 chr14 90396502 90408268 + CARM1 chr19 10871513 10923070 + EEA1 chr12 92770637 92929331 - GATAD2B chr1 153789030 153923360 - HDLBP chr2 241227264 241317061 - IQGAP1 chr15 90388242 90502239 + LGMN chr14 92703807 92748679 - MAEA chr4 1289887 1340147 + MAPK3 chr16 30114105 30123506 - MMAB chr12 109553715 109573580 - MRPL22 chr5 154941073 154969411 + NRIP1 chr21 14961235 15065936 - NUFIP2 chr17 29255839 29294148 - PKM chr15 72199029 72231822 - PVR chr19 44643798 44666162 + SLC16A1 chr1 112911847 112957013 - TIMP3 chr22 32801701 32863043 + TPX2 chr20 31739271 31801805 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007637.1 chr12 109111218 109125594 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA