exRNAdisease

Entry Detail

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General Information

Database ID: exR0373490 RNA Name: ACAD11 RNA Type: mRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 132558138 End Site(bp): 132660082 External Links: ENSG00000240303

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand NPHP3-ACAD11 chr3 132558142 132722459 - BET1L chr11 167784 207428 - P4HB chr17 81843161 81860624 - STIM1 chr11 3854527 4093210 + HLA-DQA1 chr6 32628179 32647062 + FAR1 chr11 13668668 13732346 + PUM2 chr2 20248691 20352234 - TCIRG1 chr11 68039025 68050895 + PIK3C2A chr11 17077730 17207983 - PRPF8 chr17 1650629 1684867 - RPS8 chr1 44775251 44778779 + HADH chr4 107989714 108035175 + ZNF311 chr6 28994785 29005316 - MDN1 chr6 89642498 89819794 - PPOX chr1 161166056 161178013 + CD52 chr1 26317958 26320523 + RPL12 chr9 127447674 127451406 - PMF1 chr1 156212993 156240042 + HSPA9 chr5 138553756 138575416 - SH3PXD2B chr5 172325000 172454525 - CACNA2D3 chr3 54122547 55074557 + TK1 chr17 78174091 78187233 - DNAJB1 chr19 14514769 14529770 - ATP5IF1 chr1 28236109 28246906 + NBDY chrX 56729241 56819179 + RABGAP1L chr1 174159410 174995308 + ZNF146 chr19 36214602 36238774 + EHMT2 chr6 31879759 31897687 - SGTB chr5 65665928 65723035 - MTHFD2 chr2 74198610 74217565 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA