exRNAdisease

Entry Detail

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General Information

Database ID: exR0373494 RNA Name: ACADM RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 75724347 End Site(bp): 75787575 External Links: ENSG00000117054

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand DBN1 chr5 177456608 177474401 - HMGA1 chr6 34236873 34246231 + ARID5A chr2 96536743 96552634 + RPN2 chr20 37178410 37241619 + HACD3 chr15 65530418 65578349 + ITGB3BP chr1 63440770 63593721 - HYOU1 chr11 119044188 119057227 - SLC35G1 chr10 93893973 93956062 + RBMXL1 chr1 88979456 88992960 - DTX4 chr11 59171430 59208588 + FOXN2 chr2 48314637 48379295 + PNN chr14 39175183 39183220 + BUB1B chr15 40161023 40221136 + DDX39B chr6 31530219 31542448 - GDI2 chr10 5765223 5842132 - FTL chr19 48965309 48966879 + PKM chr15 72199029 72231822 - SRRM1 chr1 24631716 24673281 + EXOSC8 chr13 36998816 37009614 + DHX8 chr17 43483865 43610338 + TRPC4 chr13 37636636 37870425 - POLDIP3 chr22 42583721 42614962 - RPL30 chr8 98024851 98046469 - COA7 chr1 52684449 52698347 - DNMT3B chr20 32762385 32809356 + ATP6V1G2-DDX39B chr6 31530219 31546608 - RPS24 chr10 78033760 78056813 + NR1H2 chr19 50329653 50383388 + NCOA4 chr10 46005088 46030714 - XPO1 chr2 61477849 61538626 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004812.2 chr12 120116907 120119000 + AC009948.2 chr2 178548884 178550681 + AC069287.1 chr11 112967 125927 - AL831711.1 chr1 161433444 161440996 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA