exRNAdisease

Entry Detail

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General Information

Database ID: exR0373496 RNA Name: ACADSB RNA Type: mRNA Chromosome: chr10 Starnd: + Coordinate: Start Site(bp): 123008979 End Site(bp): 123058290 External Links: ENSG00000196177

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand B2M chr15 44711487 44718877 + B4GAT1 chr11 66345374 66347629 - BUB3 chr10 123154402 123170467 + C11orf58 chr11 16613132 16758340 + CCND2 chr12 4273762 4305353 + COX18 chr4 73052362 73069755 - DDX24 chr14 94048287 94081212 - DHCR24 chr1 54849627 54887195 - EIF4E chr4 98871684 98930637 - HLA-B chr6 31269491 31357188 - MCFD2 chr2 46901870 46941855 - MICB chr6 31494881 31511124 + NCOR1 chr17 16029157 16218185 - NFATC3 chr16 68084751 68229259 + NOP53 chr19 47745546 47757058 + POGK chr1 166839447 166856344 + POLE3 chr9 113407235 113410675 - RFFL chr17 35005990 35089319 - TPT1 chr13 45333471 45341370 - VMP1 chr17 59707192 59842255 + YWHAE chr17 1344275 1400222 - YWHAQ chr2 9583967 9630997 - ZNF100 chr19 21722771 21767579 - miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA