exRNAdisease

Entry Detail

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General Information

Database ID: exR0373499 RNA Name: ACAP1 RNA Type: mRNA Chromosome: chr17 Starnd: + Coordinate: Start Site(bp): 7336529 End Site(bp): 7351477 External Links: ENSG00000072818

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand HLA-DRA chr6 32439878 32445046 + FOXH1 chr8 144473412 144475849 - ZNF449 chrX 135344796 135363413 + MIF chr22 23894383 23895227 + KDF1 chr1 26949562 26960468 - SQSTM1 chr5 179806398 179838078 + PFN1 chr17 4945652 4949061 - CD74 chr5 150400041 150412929 - RGS10 chr10 119499817 119542719 - TUBB chr6 30720352 30725426 + ISG15 chr1 1001138 1014540 + C20orf204 chr20 64034344 64039962 + AL133352.1 chr10 100505628 100529881 - DHX16 chr6 30653119 30673006 - AP002990.1 chr11 62559603 62591531 - UGCG chr9 111896814 111935369 + DNAJC30 chr7 73680918 73683453 - ACTG1 chr17 81509971 81523847 - VPS53 chr17 508668 721717 - HLA-DMA chr6 32948613 32969094 - CDC25B chr20 3786772 3806121 + RCC1 chr1 28505943 28539300 + YME1L1 chr10 27110112 27155266 - REEP3 chr10 63521401 63625128 + CD70 chr19 6583183 6604103 - ZNF593 chr1 26169908 26170873 + NSMF chr9 137447573 137459334 - EXOC3 chr5 443175 471937 + ZNF761 chr19 53445001 53458261 + APH1A chr1 150265399 150269580 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC139149.1 chr17 81514047 81527776 + LINC01184 chr5 127939152 128083172 - SNHG3 chr1 28505980 28510892 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA