exRNAdisease

Entry Detail

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General Information

Database ID: exR0373508 RNA Name: ACCS RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 44065925 End Site(bp): 44084237 External Links: ENSG00000110455

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CNN2 chr19 1026586 1039068 + EGR3 chr8 22687659 22693480 - EPCAM chr2 47345158 47387601 + EXT2 chr11 44095673 44251981 + IRF8 chr16 85899162 85922606 + LSP1 chr11 1852970 1892267 + NDUFA2 chr5 140638740 140647785 - PPCDC chr15 75023586 75117462 + RALA chr7 39623565 39708120 + RPL35 chr9 124857880 124861981 - TMEM79 chr1 156282935 156293185 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC134775.1 chr11 44071462 44072403 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA