exRNAdisease

Entry Detail

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General Information

Database ID: exR0373509 RNA Name: ACD RNA Type: mRNA Chromosome: chr16 Starnd: - Coordinate: Start Site(bp): 67657512 End Site(bp): 67660815 External Links: ENSG00000102977

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand DHX9 chr1 182839347 182887982 + DGCR2 chr22 19036282 19122454 - HSP90AB1 chr6 44246166 44253888 + AP002990.1 chr11 62559603 62591531 - ZNF23 chr16 71447597 71463095 - DUSP3 chr17 43766125 43778977 - EEF1G chr11 62559596 62574086 - SEC22C chr3 42547969 42601080 - SLC35B2 chr6 44254096 44257890 - PPM1A chr14 60245752 60299087 + CDK16 chrX 47217860 47229997 + MEPCE chr7 100428790 100434118 + FGFRL1 chr4 1009936 1026898 + NAA10 chrX 153929225 153935080 - MT-CO1 chrMT 5904 7445 + ATP6V1D chr14 67294371 67360265 - EFTUD2 chr17 44849948 44899445 - TFAM chr10 58385345 58399220 + RAF1 chr3 12583601 12664226 - MARCKSL1 chr1 32333839 32336233 - CNOT1 chr16 58519951 58629885 - FSTL3 chr19 676392 683392 + HNRNPD chr4 82352498 82374503 - PCBP2 chr12 53452102 53481162 + TSPAN9 chr12 3077355 3286564 + PSMA4 chr15 78540405 78552417 + GCN1 chr12 120127202 120194715 - COX14 chr12 50112082 50120457 + GNAS chr20 58839718 58911192 + RPS6KA1 chr1 26529761 26575030 + miRNA targets: NA circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA