exRNAdisease

Entry Detail

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General Information

Database ID: exR0373513 RNA Name: ACER3 RNA Type: mRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 76860867 End Site(bp): 77026797 External Links: ENSG00000078124

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand SLC39A13 chr11 47407132 47416496 + HLA-A chr6 29941260 29945884 + BANP chr16 87949244 88077318 + ARCN1 chr11 118572390 118603033 + PPIB chr15 64155812 64163205 - NDUFC2-KCTD14 chr11 78016971 78079865 - CCT2 chr12 69585426 69601570 + PTRH2 chr17 59674636 59707626 - TBC1D4 chr13 75283503 75482169 - NDUFC2 chr11 78068297 78079862 - KLHL7 chr7 23105758 23177914 + EIF3C chr16 28688558 28735730 + DNAJB6 chr7 157335381 157417439 + RPS10-NUDT3 chr6 34284887 34426071 - RPS10 chr6 34417454 34426069 - C22orf39 chr22 19351368 19448232 - MRFAP1L1 chr4 6707701 6709865 - SLC3A2 chr11 62856102 62888875 + TSKU chr11 76782251 76798153 + DPH1 chr17 2030110 2043430 + SYAP1 chrX 16719612 16765340 + HNRNPH1 chr5 179614178 179634784 - SHMT2 chr12 57229573 57234935 + RPL27A chr11 8682788 8714759 + FAM3C chr7 121348878 121396364 - PRDX3 chr10 119167720 119178812 - CNN2 chr19 1026586 1039068 + NOTCH2 chr1 119911553 120100779 - CDC42SE2 chr5 131245493 131398447 + AC010422.3 chr19 12643831 12648397 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-27a-3p chr19 13836447 13836467 - hsa-miR-129-5p chr7 128207876 128207896 + hsa-miR-27b-3p chr9 95085505 95085525 + circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA