exRNAdisease

Entry Detail

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General Information

Database ID: exR0373518 RNA Name: ACKR3 RNA Type: mRNA Chromosome: chr2 Starnd: + Coordinate: Start Site(bp): 236567787 End Site(bp): 236582354 External Links: ENSG00000144476

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CBSL chr21 6444869 6468040 - EIF3C chr16 28688558 28735730 + TOP2B chr3 25597905 25664907 - HNRNPH2 chrX 101408222 101414133 + EXOC8 chr1 231332753 231337852 - TMEM106B chr7 12211270 12243367 + AHCY chr20 34280268 34311802 - PKM chr15 72199029 72231822 - HMGB2 chr4 173331376 173334432 - SPTAN1 chr9 128552558 128633662 + ADK chr10 74151202 74709963 + AKAP1 chr17 57085092 57121346 + LIN28A chr1 26410817 26429728 + RPL13A chr19 49487554 49492308 + CTNND1 chr11 57753243 57819546 + ZNF318 chr6 43307134 43369647 - CCT4 chr2 61868085 61888671 - PRICKLE3 chrX 49174802 49186528 - WDR83OS chr19 12668073 12669415 - ARNT chr1 150809713 150876708 - EZR chr6 158765741 158819368 - CBS chr21 43053191 43076943 - HEY2 chr6 125747664 125761269 + PHC2 chr1 33323623 33431052 - RIBC2 chr22 45413693 45432509 + HLA-DRB5 chr6 32517353 32530287 - NAP1L1 chr12 76036585 76084958 - HNRNPA1 chr12 54280193 54287088 + EIF4A3 chr17 80134369 80147151 - CLSTN1 chr1 9728926 9823984 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-455-3p chr9 114209487 114209507 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC007743.1 chr2 56173534 56185870 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA