exRNAdisease

Entry Detail

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General Information

Database ID: exR0373523 RNA Name: ACO2 RNA Type: mRNA Chromosome: chr22 Starnd: + Coordinate: Start Site(bp): 41469117 End Site(bp): 41528989 External Links: ENSG00000100412

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RASA4 chr7 102573807 102616757 - NOC2L chr1 944203 959309 - RPS17 chr15 82536750 82540459 - LAMA1 chr18 6941742 7117797 - DPYSL2 chr8 26514031 26658178 + MTIF2 chr2 55236595 55269347 - EDIL3 chr5 83940554 84384880 - NAMPT chr7 106248298 106286326 - CDH1 chr16 68737292 68835541 + AP002990.1 chr11 62559603 62591531 - DDX19B chr16 70289663 70335283 + IFITM1 chr11 313506 315272 + COMT chr22 19941733 19969975 + R3HDM2 chr12 57253762 57431005 - HNRNPK chr9 83968083 83980616 - TMBIM6 chr12 49707725 49764934 + TUBB chr6 30720352 30725426 + U2AF1L5 chr21 6484623 6499261 - WDR74 chr11 62832342 62841809 - IQCB1 chr3 121769761 121835079 - KIF26A chr14 104138723 104180894 + CDCA2 chr8 25459199 25507911 + RRP36 chr6 43021623 43034156 + PTPRS chr19 5158495 5340803 - HDGFL3 chr15 83112738 83207823 - DAP chr5 10679230 10761272 - CD52 chr1 26317958 26320523 + PSMA2 chr7 42916861 42932185 - COPG1 chr3 129249606 129277773 + FRMPD4 chrX 11822423 12724523 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC079781.5 chr7 97851688 97972985 - AC147651.4 chr7 603185 608482 + AC245033.4 chr15 82533175 82540008 - SNHG19 chr16 2154797 2155358 - SNHG7 chr9 136721366 136728184 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA