exRNAdisease

Entry Detail

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General Information

Database ID: exR0373524 RNA Name: ACOT1 RNA Type: mRNA Chromosome: chr14 Starnd: + Coordinate: Start Site(bp): 73537143 End Site(bp): 73543796 External Links: ENSG00000184227

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD14B chr3 51968510 51983409 - ACAP2 chr3 195274745 195443044 - ACOT2 chr14 73567620 73575658 + ACOT4 chr14 73591706 73596496 + ACOT6 chr14 73610945 73619888 + B2M chr15 44711487 44718877 + FOXO3 chr6 108559835 108684774 + ITPR3 chr6 33620365 33696574 + MAPKAPK5 chr12 111842228 111902222 + MUC4 chr3 195746765 195811973 - PPIB chr15 64155812 64163205 - RAC2 chr22 37225270 37244448 - RGS16 chr1 182598623 182604389 - RPL13A chr19 49487554 49492308 + RPS20 chr8 56067295 56074581 - TPM2 chr9 35681992 35690056 - ZDHHC4 chr7 6577434 6589374 + ZNF592 chr15 84748592 84806445 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC092296.2 chr19 36304564 36321274 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA