exRNAdisease

Entry Detail

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General Information

Database ID: exR0373527 RNA Name: ACOT13 RNA Type: mRNA Chromosome: chr6 Starnd: + Coordinate: Start Site(bp): 24667035 End Site(bp): 24705065 External Links: ENSG00000112304

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand CCT3 chr1 156308968 156367873 - CDC26 chr9 113255835 113275572 - PARP1 chr1 226360691 226408093 - MTRNR2L8 chr11 10507894 10509186 - NDRG4 chr16 58462846 58513628 + TMEM97 chr17 28319200 28328685 + CBX5 chr12 54230942 54280133 - RAF1 chr3 12583601 12664226 - ZBTB25 chr14 64449106 64505213 - SLC16A3 chr17 82228397 82261129 + FUT4 chr11 94543840 94549898 + TRIM69 chr15 44728988 44767829 + RPS15 chr19 1438358 1440494 + HNRNPUL2-BSCL2 chr11 62690275 62727384 - RPRD1A chr18 35984387 36067576 - EEF1A1 chr6 73515750 73523797 - HNRNPUL2 chr11 62712630 62727457 - AL121594.1 chr14 35122549 35317474 + PRPF38A chr1 52404602 52420836 + FZD3 chr8 28494205 28574267 + SMPDL3A chr6 122789049 122809720 + CALM3 chr19 46601074 46610782 + EFNA1 chr1 155127876 155134899 + EI24 chr11 125569280 125584684 + RND2 chr17 43025231 43032041 + TAF15 chr17 35713791 35864615 + PRRC1 chr5 127517609 127555089 + KDM1A chr1 23019443 23083689 + MSC chr8 71841549 71844468 - MFSD5 chr12 53251251 53254405 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-92a-3p chrX 134169544 134169565 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand MIR17HG chr13 91347820 91354579 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA