exRNAdisease

Entry Detail

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General Information

Database ID: exR0373563 RNA Name: ACTA2 RNA Type: mRNA Chromosome: chr10 Starnd: - Coordinate: Start Site(bp): 88935074 End Site(bp): 88991339 External Links: ENSG00000107796

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ZNF516 chr18 76357682 76495242 - HNRNPDL chr4 82422564 82430408 - RPS16 chr19 39433137 39435949 - HLA-B chr6 31269491 31357188 - ATP5F1B chr12 56638175 56645984 - TMSB4X chrX 12975110 12977227 + HLA-A chr6 29941260 29945884 + POTEF chr2 130073535 130129222 - GCN1 chr12 120127202 120194715 - HNRNPH3 chr10 68331174 68343191 + TRAP1 chr16 3651639 3717553 - ATP5PB chr1 111448864 111462773 + PWWP2B chr10 132397168 132417859 + PHF23 chr17 7235029 7239722 - HLA-DMA chr6 32948613 32969094 - RPS8 chr1 44775251 44778779 + PEX2 chr8 76980258 77001044 - BAIAP2L1 chr7 98291650 98401090 - CLUH chr17 2689386 2712663 - UQCRC1 chr3 48599002 48610976 - CCT7 chr2 73233420 73253021 + HLA-DQA1 chr6 32628179 32647062 + ACTG1 chr17 81509971 81523847 - CNBP chr3 129169484 129183922 - PTTG1 chr5 160421855 160428739 + ATN1 chr12 6924463 6942321 + DDIT4 chr10 72273924 72276036 + POLN chr4 2071918 2242121 - RAB12 chr18 8609437 8639382 + RARA chr17 40309180 40357643 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC139149.1 chr17 81514047 81527776 + AC013269.1 chr2 130530275 130537182 + MALAT1 chr11 65497688 65506516 + NEAT1 chr11 65422774 65445540 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA