exRNAdisease

Entry Detail

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General Information

Database ID: exR0373591 RNA Name: ACVR1 RNA Type: mRNA Chromosome: chr2 Starnd: - Coordinate: Start Site(bp): 157736444 End Site(bp): 157876330 External Links: ENSG00000115170

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand BCAT1 chr12 24810024 24949101 - BRINP1 chr9 119153458 119369435 - CIT chr12 119685791 119877320 - EIF4B chr12 53006158 53042209 + EWSR1 chr22 29268009 29300525 + IFITM2 chr11 307631 315272 + KPNA4 chr3 160495007 160565571 - MAZ chr16 29806106 29811164 + MRPS5 chr2 95085369 95149434 - MT-CO3 chrMT 9207 9990 + NSL1 chr1 212726153 212791782 - PEF1 chr1 31629866 31644896 - RPS27A chr2 55231903 55235853 + SKAP2 chr7 26667068 26995239 - TCF12 chr15 56918623 57299281 + ZBED6 chr1 203795714 203854999 + ZC3H11A chr1 203795654 203854999 + ZNF468 chr19 52838010 52857649 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-876-5p chr9 28863675 28863696 - circRNA targets: NA lncRNA targets: NA Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA