exRNAdisease

Entry Detail

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General Information

Database ID: exR0373597 RNA Name: ACY1 RNA Type: mRNA Chromosome: chr3 Starnd: + Coordinate: Start Site(bp): 51983340 End Site(bp): 51989197 External Links: ENSG00000243989

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand INVS chr9 100099243 100302175 + PPP2R5E chr14 63371364 63543377 - SRSF1 chr17 58000919 58007346 - ANP32A chr15 68778535 68820897 - KDELR2 chr7 6445953 6484190 - OAS2 chr12 112978395 113011723 + ILF3 chr19 10654261 10692417 + SLC25A3 chr12 98593591 98606379 + ABCG2 chr4 88090150 88231628 - MAPK3 chr16 30114105 30123506 - TUBA1B chr12 49127782 49131397 - NEDD8 chr14 24216857 24232367 - ABHD14A-ACY1 chr3 51974706 51989183 + LASP1 chr17 38869859 38921770 + HERC1 chr15 63608618 63833948 - LRIG3 chr12 58872149 58920522 - TPI1 chr12 6867119 6870948 + ZNF623 chr8 143636013 143656418 + UBC chr12 124911604 124917368 - RPS3 chr11 75399515 75422280 + RBM38 chr20 57391396 57409333 + UCKL1 chr20 63939829 63956416 - PPTC7 chr12 110533245 110583318 - TRIM28 chr19 58544064 58550722 + RPLP0 chr12 120196699 120201235 - PABPN1 chr14 23321289 23326185 + GANAB chr11 62624826 62646726 - PLAT chr8 42174718 42207676 - TMEM184B chr22 38219291 38273010 - GNL3 chr3 52681156 52694497 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-625-5p chr14 65471116 65471136 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AD000090.1 chr19 35557956 35581954 + DANCR chr4 52712404 52720351 + Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA