exRNAdisease

Entry Detail

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General Information

Database ID: exR0373608 RNA Name: ADAM15 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 155050566 End Site(bp): 155062775 External Links: ENSG00000143537

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand NNT chr5 43602692 43707405 + PCSK1N chrX 48831096 48835610 - RBM26 chr13 79311824 79406477 - AC096887.1 chr3 52969119 53099453 - DSG2 chr18 31498177 31549008 + NR3C1 chr5 143277931 143435512 - SF3A2 chr19 2236824 2248655 + MKI67 chr10 128096659 128126423 - HDHD5 chr22 17137511 17165287 - VAMP7 chrX 155881345 155943769 + CBFB chr16 67028984 67101058 + DYNLL2 chr17 58083419 58095542 + KIFC1 chr6 33391823 33409896 + SIGMAR1 chr9 34634722 34637809 - MTRNR2L12 chr3 96617188 96618236 - CNOT9 chr2 218568580 218597080 + OTUD4 chr4 145110838 145180589 - ATG4B chr2 241637213 241673857 + WNK1 chr12 752579 911452 + LTBP1 chr2 32946953 33399509 + MTHFD1 chr14 64388031 64463457 + ALDOA chr16 30064164 30070457 + APEX1 chr14 20455191 20457772 + TNRC18 chr7 5306790 5425414 - HK1 chr10 69269984 69401884 + MARCKS chr6 113857345 113863475 + SETD6 chr16 58515479 58521181 + PAX9 chr14 36657568 36679362 + NEK6 chr9 124257606 124353307 + PCYOX1L chr5 149358037 149369653 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA