exRNAdisease

Entry Detail

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General Information

Database ID: exR0373626 RNA Name: ADAMTS1 RNA Type: mRNA Chromosome: chr21 Starnd: - Coordinate: Start Site(bp): 26835755 End Site(bp): 26845409 External Links: ENSG00000154734

Disease Information

Disease Name: Low Birth Weight Disease Category: Other Diseases MeSH ID: D007230 Type: Age Groups/Infant Alias: Infant, Low Birth Weight//Low-Birth-Weight Infant//Infant, Low-Birth-Weight//Infants, Low-Birth-Weight//Low Birth Weight Infant//Low-Birth-Weight Infants//Low Birth Weight//Birth Weight, Low//Birth Weights, Low//Low Birth Weights

Expression Detail

GEO ID: GSE29807 Description: Gene expression study reveals compromised Pattern Recognition Receptors and Interferon Signaling in fullterm Low birth Weight newborns Experimental Design: Disease vs Control Case Disease Type: Low Birth Weight Case Disease SubType: NA Case Sample: Low Birth Weight Control Sample: Normal Number of Case: 8 Number of Control: 4 Number of Samples: 12

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand RBM39 chr20 35701347 35742312 - KATNBL1 chr15 34140674 34210096 - SCRN1 chr7 29920104 29990289 - NPIPA8 chr16 18317942 18336736 - HECTD4 chr12 112160188 112382439 - MRPL38 chr17 75898643 75905413 - IDH2 chr15 90083045 90102504 - SEC31A chr4 82818509 82901166 - HNRNPCL2 chr1 13115488 13116854 - TMEM259 chr19 1009648 1021179 - RECQL5 chr17 75626845 75667189 - TAX1BP3 chr17 3662895 3668679 - MARK4 chr19 45079288 45305284 + GPI chr19 34359480 34402413 + HCFC1 chrX 153947557 153971818 - FAM13B chr5 137937960 138051961 - TAOK2 chr16 29973868 29992261 + TM9SF3 chr10 96518110 96587452 - MINDY4 chr7 30771417 30892387 + KIF13A chr6 17759183 17987635 - SOX9 chr17 72121020 72126416 + ATIC chr2 215311956 215349773 + RRM1 chr11 4094707 4138932 + TMEM179B chr11 62787402 62790400 + UBE2W chr8 73780097 73878910 - GMPPB chr3 49716844 49723951 - EMC9 chr14 24138959 24141591 - AC087289.3 chr17 75898645 75930129 - SON chr21 33543038 33577481 + PIP4K2A chr10 22534854 22714578 - miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC040160.2 chr16 67261108 67263784 + GATA2-AS1 chr3 128489212 128502970 + RMRP chr9 35657751 35658018 - XIST chrX 73820649 73852723 - Display:

Experiment Detail

GEO ID: GSE29807 Sample Source: Cord Blood Source Fraction: Umblical Cord Blood Platform: GPL570 Method: Microarray Num of detected RNA Type: 1 Num of detected RNAs of this Type: 17063 Sample treatment protocol: NA RNA Extract protocol: The RNA was extracted using Tri-reagent (Sigma) as per manufacture's instructions. RNA library preparation protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

Reference

PMID: NA Title: NA Author: NA Journal: NA Description: NA